friend1ws/nanomonsv

Issues

• BND reference base disagreement

  #69 opened 21 days ago by readmanchiu
  0

• nanomonsv.parse - ERROR - query end inconsistent!!

  #68 opened 5 months ago by ywzhang071394
  1

• definition of duplication

  #67 opened 7 months ago by charliechen912ilovbash
  1

• unrecognized arguments - fasta file

  #66 opened 9 months ago by setshabaTaukobong
  10

• the use of CHM13 reference for SV detection

  #64 opened 9 months ago by charliechen912ilovbash
  3

• Output of get command

  #62 opened 9 months ago by eesiribloom
  0

• IndexError: list index out of range

  #41 opened a year ago by tbenavi1
  6

• Genotyping variants

  #13 opened 3 years ago by Akazhiel
  3

• VCF file annotation problem

  #61 opened 10 months ago by skeremaydin
  0

• nanomonsv.parse - ERROR - query end inconsistent!! m84039_230327_233730_s2/157488965/ccs: 909 != 628

  #60 opened 10 months ago by skeremaydin
  0

• module not found: annot_utils

  #59 opened a year ago by bakeronit
  2

• installation via bioconda broken

  #58 opened a year ago by ptrebert
  0

• Simulated data used for the paper

  #57 opened a year ago by waltergallegog
  0

• Insertion detected when using mafft and not when using racon

  #55 opened a year ago by waltergallegog
  1

• incorrect supporting read counts and VAF for inversions

  #54 opened a year ago by abelhj
  0

• [Question] How are POS, LEN and SEQ of insertions determined

  #53 opened a year ago by waltergallegog
  2

• Control panel aligned to T2T 2.0 reference

  #52 opened a year ago by tbenavi1
  1

• ERROR - query end inconsistent when running parse

  #45 opened a year ago by asherbryant
  7

• End position occurs before start position

  #31 opened 2 years ago by zhemingfan
  4

• ERROR - query end inconsistent!!

  #51 opened a year ago by xwBio
  1

• Expected deletion in mock sample not being called

  #29 opened a year ago by zhemingfan
  1

• simple repeat filtered result is not included in vcf output

  #48 opened a year ago by charliechen912ilovbash
  4

• Recomanded settings for Dorado basecaller

  #50 opened a year ago by zhengzhenxian
  2

• Updated version of racon

  #49 opened a year ago by RenzoTale88
  1

• intra-chromosomal translocation vs deletion/inversion

  #46 opened a year ago by charliechen912ilovbash
  1

• local variable 'is_insert_type' referenced before assignment

  #47 opened a year ago by charliechen912ilovbash
  1

• Signal 6 (SIGABRT) when running get

  #39 opened a year ago by asherbryant
  10

• sup read seq in vcf

  #18 opened a year ago by charliechen912ilovbash
  0

• TypeError: 'NoneType' object is not subscriptable

  #42 opened a year ago by myxotheles
  1

• How to Calculate Recall and Precision

  #43 opened a year ago by XuYan000131
  0

• Question over code

  #35 opened a year ago by RenzoTale88
  3

• CRAM support

  #38 opened 2 years ago by willhooper
  6

• SIGILL: 4 error

  #37 opened 2 years ago by MartinezRuiz-Carlos
  3

• python: src/memory.c:244: parasail_result_new_trace: Assertion `a > 0' failed.

  #36 opened 2 years ago by charliechen912ilovbash
  3

• nanomonsv insert_classify: Executable does not exist: minimap2

  #24 opened 2 years ago by charliechen912ilovbash
  1

• nanomonsv get with `--single_bnd` fails

  #32 opened 2 years ago by mooomooo131
  1

• Run time and disk space required in version 0.5

  #30 opened 2 years ago by waltergallegog
  3

• circular DNA in output

  #27 opened 2 years ago by charliechen912ilovbash
  1

• TypeError: NoneType object is not subscriptable, if cigarstring == *

  #22 opened 2 years ago by Simarpreet-Kaur-Bhurji
  3

• Bug Report: Input not found with symlinked input BAMs

  #28 opened 2 years ago by zhemingfan
  1

• More information/benchmarks on --processes for get

  #26 opened 2 years ago by awgymer
  0

• about compare with short read SV in paper

  #25 opened 2 years ago by charliechen912ilovbash
  4

• supporting read ID not included in output

  #19 opened 2 years ago by charliechen912ilovbash
  9

• Running nanomonsv with WGS samples

  #23 opened 3 years ago by waltergallegog
  2

• More than 1 controls?

  #21 opened 3 years ago by AhmedArslan
  3

• position of insertion

  #20 opened 3 years ago by charliechen912ilovbash
  1

• The minimum normal variant read

  #16 opened 3 years ago by charliechen912ilovbash
  6

• No space left on device

  #17 opened 3 years ago by charliechen912ilovbash
  4

• The parameter used for tested data

  #15 opened 3 years ago by charliechen912ilovbash
  1

• SV not detected

  #14 opened 3 years ago by Akazhiel
  3