ptrebert

Pinned Repositories

creepiest
Language:Python0 1 00
HiFiAdapterFilt
Convert .bam to .fastq and remove reads with remnant PacBio adapter sequences
Language:Shell0 0 00
project-cross-species
Project repository for cross-species epigenomics
Language:Jupyter Notebook2 0 00
project-diploid-assembly
Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
Language:Jupyter Notebook15 3 73
project-kmer-variants
Language:Python1 1 00
sciddo
Home of the SCIDDO tool
Language:Python1 2 51

ptrebert's Repositories

ptrebert/project-diploid-assembly
Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
Language:Jupyter Notebook15 3 73
ptrebert/project-cross-species
Project repository for cross-species epigenomics
Language:Jupyter Notebook2 0 00
ptrebert/project-kmer-variants
Language:Python1 1 00
ptrebert/sciddo
Home of the SCIDDO tool
Language:Python1 2 51
ptrebert/creepiest
Language:Python0 1 00
ptrebert/HiFiAdapterFilt
Convert .bam to .fastq and remove reads with remnant PacBio adapter sequences
Language:Shell0 0 00
ptrebert/long-read-datasets
Index of public long read datasets
0 0
ptrebert/manifesto
Create MANIFEST files required for data uploads to certain public repositories
Language:Python1 0
ptrebert/NucFreqTwo
Language:Python0 0
ptrebert/ontourage
Home of the ONTourage tool
Language:Python1 0
ptrebert/piedpiper
Language:Python1 0
ptrebert/pitlib
Playground repository for code snippets, useful notebooks and self-education
Language:Python0 0
ptrebert/portfolio
List of projects
0 0
ptrebert/process-g1k-metadata
Language:Jupyter Notebook1 0
ptrebert/project-collaborations
Language:Python1 0
ptrebert/project-diff-chromatin-state
Language:Jupyter Notebook0 0
ptrebert/ptrebert.github.io
Language:SCSS0 0
ptrebert/ref-container
Language:Python1 0
ptrebert/reference-data
Language:Python1 0