eesiribloom

Pinned Repositories

• AmpliconClassifier

  Classify output of AmpliconArchitect to detect types of focal amplifications present

  Language:Python1351811

• AmpliconSuite-pipeline

  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.

  Language:Python4865125

• CycleViz

  Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.

  Language:Python20586

• nanomonsv

  SV detection tool for nanopore sequence reads

  Language:Python7886011

• Severus

  A tool for somatic structural variant calling using long reads

  Language:Python83361

• DeBreak

  Structural variant caller for real-time long-read sequencing data

  Language:Python485

• dorado

  Oxford Nanopore's Basecaller

  Language:C++4383189053

• ecc_finder

  a tool to detect eccDNA using Illumina and ONT sequencing

  Language:Python135

• nanofilt

  Filtering and trimming of long read sequencing data

  Language:Python183105714

• whatshap

  Read-based phasing of genomic variants, also called haplotype assembly

  Language:Python3151345936

eesiribloom's Repositories