ywzhang071394

Pinned Repositories

• SCEVAN

  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

  Language:HTML93412624

• figeno

  Tool for plotting sequencing data along genomic coordinates.

  Language:Python2546228

• delly

  DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

  Language:C++44534361137

• SURVIVOR

  Toolset for SV simulation, comparison and filtering

  Language:C++3581221246

• ClusterGVis

  One-step to Cluster and Visualize Gene Expression Matrix

  Language:R25049924

• Severus

  A tool for somatic structural variant calling using long reads

  Language:Python1055325

• minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.8k851.1k416

• Ribbon

  A genome browser designed for complex structural variants and long reads.

  Language:JavaScript271156629

• copykat

  Language:R2141012055

• whatshap

  Read-based phasing of genomic variants, also called haplotype assembly

  Language:Python3431448340

ywzhang071394's Repositories