MariaNattestad/Ribbon

Issues

• Look into supporting CNV calls

  #70 opened a month ago by robertaboukhalil
  2

• Potential improvements

  #77 opened a month ago by robertaboukhalil
  0

• Some HTTPS links try to download the whole file?

  #102 opened a month ago by robertaboukhalil
  0

• Load VCFs and other files from URLs

  #84 opened a month ago by robertaboukhalil
  0

• Load session JSON from a URL

  #60 opened a month ago by robertaboukhalil
  0

• Documentation

  #67 opened a month ago by robertaboukhalil
  0

• Zoom in on part of a read

  #64 opened 2 months ago by robertaboukhalil
  0

• Use VCF input instead of BEDPE

  #59 opened a month ago by robertaboukhalil
  0

• Consolidate UI to connect Ribbon and SplitThreader

  #75 opened a month ago by MariaNattestad
  0

• Rethink features and small variants in Ribbon

  #95 opened a month ago by MariaNattestad
  0

• Visualize reads by haplotype

  #62 opened a month ago by robertaboukhalil
  0

• Reference coordinates in the top and bottom views

  #69 opened a month ago by robertaboukhalil
  0

• Support small chromosomes

  #68 opened a month ago by robertaboukhalil
  0

• visualize complex structural variants

  #86 opened a month ago by ywzhang071394
  3

• Visualize multiple BAMs/VCFs

  #63 opened 2 months ago by robertaboukhalil
  1

• Fix duplicate HTML element IDs

  #79 opened a month ago by robertaboukhalil
  0

• Variants table: add scrollbar

  #65 opened a month ago by robertaboukhalil
  0

• Replace iobio for loading BAM URLs

  #74 opened a month ago by robertaboukhalil
  0

• Warn if reads are downsampled

  #66 opened 2 months ago by robertaboukhalil
  1

• Update BED/VCF file without reloading the page

  #61 opened 2 months ago by robertaboukhalil
  1

• Code cleanup

  #72 opened 2 months ago by robertaboukhalil
  0

• Bring SplitThreader into Ribbon

  #58 opened 2 months ago by robertaboukhalil
  2

• Remove backend from SplitThreader

  #57 opened 2 months ago by robertaboukhalil
  0

• Running Ribbon without internet access

  #50 opened 2 years ago by psammarco
  16

• MUMmer does not identify regions from positive control samples

  #55 opened 2 years ago by s-t-calus
  1

• Filtering reads with multi-read settings

  #54 opened 2 years ago by HannahJusten
  5

• how to remove expand regions from selected region

  #51 opened 2 years ago by panxiaoguang
  2

• upload data from server

  #49 opened 2 years ago by jainy
  1

• PG lines error although only one line contains the @PG header

  #45 opened 2 years ago by Estherrr1997
  13

• load a bigger sam file

  #44 opened 2 years ago by anastasiiasatyr
  1

• Ribbon

  #41 opened 4 years ago by duhuipeng
  1

• Converting mummer alignment to bam, sam or coord-ITH format

  #40 opened 4 years ago by dieunelderilus
  2

• Fusions from Short Read Illumina Data

  #37 opened 4 years ago by jennylsmith
  2

• Links Not Working on Linux

  #36 opened 4 years ago by taylorjtamu
  2

• question about permalink configurations

  #35 opened 4 years ago by sdemirci
  3

• "Aw, Snap!" on Chrome

  #33 opened 4 years ago by francoiskroll
  2

• how to get the gorilla_to_GRCh38 coords file just like in the website example?

  #15 opened 4 years ago by JiguangPeng
  0

• Command line interface

  #12 opened 4 years ago by sjackman
  6

• Support for CSI BAM index

  #9 opened 4 years ago by nathanhaigh
  1

• error loading coords file

  #17 opened 4 years ago by rotifergirl
  1

• Scale chromosomes by size when viewing coordinates?

  #25 opened 4 years ago by conte1
  1

• Loading PacBio data

  #32 opened 4 years ago by plurie
  1

• Info: Total reads mapped in region: 0

  #10 opened 4 years ago by dwaggott
  5

• genomeribbon.com down?

  #30 opened 4 years ago by conte1
  2

• output file

  #29 opened 4 years ago by Br1anChou
  1

• Installation help

  #28 opened 5 years ago by cssulliv
  1

• unable to load BAM files

  #18 opened 6 years ago by hd00ljy
  7

• Ribbon on Linux

  #13 opened 6 years ago by catch-minie
  1

• why do bam files with multiple @PG header lines have been found to have issues fetching records.

  #16 opened 6 years ago by cangfengzhe
  2

• Error: File taking too long to load

  #14 opened 6 years ago
  2