nathanhaigh
Associate Director of Genome Informatics at Alkahest Inc.
Alkahest Inc.Adelaide, Australia
Pinned Repositories
2019_EMBL-ABR_Snakemake_webinar
Scripts and Snakemake pipeline used in the EMBL-ABR webinar
amos
A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/
embl-abr-snakemake-nextflow-workshop
Hands-on workshop for Snakemake and Nextflow
nathan_sysadmin_scripts
A collection of various sysadmin-related scripts which others might find useful.
nectar-workshop-template
Files used for instantiating multiple VMs on the Australian NeCTAR Reseach Cloud for the purpose of running hands-on training workshops. It is also possible to generate NX Session files making the NX client setup fast and painless.
ngs-handout
This project is in the process of being ported over to another repository.
parallel-rsync
Parallelised rsync - using GNU parallel
snakemake-tutorial
nathanhaigh's Repositories
nathanhaigh/parallel-rsync
Parallelised rsync - using GNU parallel
nathanhaigh/2019_EMBL-ABR_Snakemake_webinar
Scripts and Snakemake pipeline used in the EMBL-ABR webinar
nathanhaigh/snakemake-tutorial
nathanhaigh/embl-abr-snakemake-nextflow-workshop
Hands-on workshop for Snakemake and Nextflow
nathanhaigh/nathan_sysadmin_scripts
A collection of various sysadmin-related scripts which others might find useful.
nathanhaigh/safpis
safpis is a Python library to access the South Australia Fuel Pricing Information Scheme (SAFPIS) REST API
nathanhaigh/snakemake_template
A small template to ease setting up new Snakemake workflows capable of submitting jobs to a Slurm cluster such as phoenix.
nathanhaigh/ronin_snakemake_demo
Demonstration Snakemake workflow for Ronin/AWS Slurm-based auto-scaling cluster
nathanhaigh/abacbs-snakemake-workshop
ABACBS Snakemake workshop materials
nathanhaigh/BASH-Intro
Introduction to BASH
nathanhaigh/Biotech7005-practicals
The practical material from the course Biotech 7005: Bioinformatics and Systems Modelling
nathanhaigh/btp-module-nextflow
nathanhaigh/btp-module-snakemake
nathanhaigh/core
:house_with_garden: Open source home automation that puts local control and privacy first.
nathanhaigh/Creative-Commons-Markdown
Markdown-formatted Creative Commons licenses
nathanhaigh/dbplyr
Database (DBI) backend for dplyr
nathanhaigh/easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
nathanhaigh/embl-abr-snakemake-nextflow
Joint Snakemake and Nextflow workshop following the EMBL-ABR hybrid mode of delivery
nathanhaigh/hacs_waste_collection_schedule
Home Assistant integration framework for (garbage collection) schedules
nathanhaigh/home-assistant-custom-component-safpis
nathanhaigh/home-assistant-glow
⚡ The power of energy measurements in your house
nathanhaigh/MUMmer3
MUMmer3
nathanhaigh/nathan_conversion_scripts
General purpose conversion scripts for a variety of purposes
nathanhaigh/pcit
PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches
nathanhaigh/pfam_domain_search
nathanhaigh/quick_rna-seq_qc
Scripts for performing a quick RNA-Seq QC
nathanhaigh/quick_rna-seq_qc_databases
Sequence databases for use with Quick RNA-Seq QC
nathanhaigh/seurat
R toolkit for single cell genomics
nathanhaigh/snakemake-hello-world
Hello, World! example for Snakemake
nathanhaigh/spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.