nathanhaigh
Associate Director of Genome Informatics at Alkahest Inc.
Alkahest Inc.Adelaide, Australia
Pinned Repositories
2019_EMBL-ABR_Snakemake_webinar
Scripts and Snakemake pipeline used in the EMBL-ABR webinar
amos
A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/
embl-abr-snakemake-nextflow-workshop
Hands-on workshop for Snakemake and Nextflow
nathan_sysadmin_scripts
A collection of various sysadmin-related scripts which others might find useful.
nectar-workshop-template
Files used for instantiating multiple VMs on the Australian NeCTAR Reseach Cloud for the purpose of running hands-on training workshops. It is also possible to generate NX Session files making the NX client setup fast and painless.
ngs-handout
This project is in the process of being ported over to another repository.
parallel-rsync
Parallelised rsync - using GNU parallel
snakemake-tutorial
nathanhaigh's Repositories
nathanhaigh/amos
A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/
nathanhaigh/cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
nathanhaigh/nectar_flavor
nathanhaigh/seqtk
nathanhaigh/sga
de novo sequence assembler using string graphs
nathanhaigh/adelaide_swc
Repo of the Adelaide SWC code
nathanhaigh/adelaide_swc_cge
Collaborative Group Excercise
nathanhaigh/btp
Bioinformatics Training Platform
nathanhaigh/GMOD_in_the_NeCTAR_Research_Cloud
An attempt to create a fully automated Bash script for building a "GMOD in the Cloud" instance, based on Ubuntu 12.04 LTS, on the NeCTAR Research Cloud. Inspiration for this comes from https://github.com/scottcain/GMODintheCloud/blob/master/GitC2_build
nathanhaigh/GMODintheCloud
nathanhaigh/puppet-bioinf_tools
Puppetised Bioinformatics Tools
nathanhaigh/puppet-common
Puppet module for common tasks
nathanhaigh/puppet-module-build
Puppet module for building tools or libraries from source if no distribution package is available
nathanhaigh/puppet-staging
nathanhaigh/qiime-deploy-conf
QIIME deployment configuration files adapted for the NeCTAR Research Cloud
nathanhaigh/r-travis
Tools for using R with Travis (http://travis-ci.org) in lieu of a website:
nathanhaigh/staden-trunk
GitHub clone of SVN repo https://staden.svn.sourceforge.net/svnroot/staden/staden/trunk (cloned by http://svn2github.com/)