fritzsedlazeck/SURVIVOR

Issues

• SURVIVOR merge is resulting in a lot of missing data, can I treat them as 0/0?

  #216 opened 4 months ago by qizhengyang2017
  2

• The missing genotype (./.) can be interpreted as a (0/0) genotype

  #224 opened a month ago by KrithikaSubramanian
  0

• How ca I merged same samples called by different tools without duplicating IDs?

  #221 opened 3 months ago by itsmestewart
  1

• simreads in fastq format

  #192 opened 2 years ago by charliechen912ilovbash
  2

• simreads fastq format

  #223 opened 2 months ago by sagarc88
  0

• get tumor.only.vcf

  #222 opened 3 months ago by DayTimeMouse
  0

• SURVIVOR always skipping 1 vcf file

  #220 opened 4 months ago by Anees-caas
  0

• merge output shows no SV

  #219 opened 4 months ago by Anees-caas
  1

• Merge vcf

  #183 opened 2 years ago by priyambial123
  2

• Index the SURVIVOR VCF file

  #218 opened 4 months ago by ywzhang071394
  0

• mangled header

  #217 opened 4 months ago by tzvi909
  1

• no read support or mapping quality info in VCF

  #201 opened a year ago by heidihyang
  1

• Incorrect zero-based VCF file

  #202 opened a year ago by ethering
  3

• VCF header fields missing

  #189 opened 2 years ago by Krannich479
  3

• Segmentation fault (core dumped) during SURVIVOR merge

  #176 opened 2 years ago by sachingadakh
  7

• filtering normal SV from tumor SV

  #215 opened 8 months ago by mdiaz09
  6

• Problem with the Compilation

  #214 opened 8 months ago by rl4940
  2

• Not able to merge insertions

  #199 opened a year ago by beantkapoor786
  5

• Bug found: SV LEN value cutted

  #213 opened 9 months ago by leone93
  0

• Expected DR field

  #191 opened 2 years ago by Akazhiel
  2

• How to merge these columns following it from SURVIVOR merge result, and gain the Paragraph software input file

  #212 opened 9 months ago by HuTaoJiaZiAckerman
  0

• about the output file, which file does it come from?

  #211 opened 10 months ago by Davidseye
  0

• Clarification on derivation of SV length and type

  #210 opened 10 months ago by olivia-gc
  0

• I call it "Nested merge"

  #209 opened 10 months ago by HuTaoJiaZiAckerman
  0

• simreads endless runtime

  #208 opened 10 months ago by bjhunt-git
  0

• error merging vcfs

  #185 opened 10 months ago by msubirana
  0

• Incorrect SVLEN for translocations in VCF file

  #207 opened 10 months ago by ethering
  0

• SURVIVOR simSV - number of SVs doesn't correspond to parmas file

  #206 opened a year ago by ethering
  0

• insertions.fa contains no insertion sequences

  #205 opened a year ago by ethering
  3

• Losing SV calls when merging files

  #186 opened 2 years ago by leonvanmierlo
  1

• Merging UKB SV Files

  #204 opened a year ago by GHawkes93
  1

• Inaccurate Chain Orientation in Survivor SV Results Merging

  #203 opened a year ago by zhaowsong
  0

• issue with merging sample vcfs already merged by calls from different programs

  #200 opened a year ago by heidihyang
  1

• merge error

  #198 opened a year ago by Qijie0615
  0

• Compatability with Duet

  #197 opened a year ago by mzwaig
  0

• INS POS!=END

  #196 opened a year ago by jasonbhn
  0

• convertAssemblytics and vcftobed issue

  #195 opened a year ago by vmukhina
  0

• Does SURVIVOR work for mobile element insertions?

  #194 opened 2 years ago by RSWilson1
  0

• simSV bed output explanation of DEL and INS position

  #193 opened 2 years ago by charliechen912ilovbash
  0

• Are the variants normalized?

  #188 opened 2 years ago by Krannich479
  1

• definition of some parameters when simulate SV

  #187 opened 2 years ago by charliechen912ilovbash
  2

• Simulating SV in PacBio reads

  #184 opened 2 years ago by priyambial123
  6

• 'TRA' in bed2vcf

  #181 opened 2 years ago by riasc
  2

• vcftobed conversion

  #182 opened 2 years ago by priyambial123
  0

• about the result of SURVIVOR

  #180 opened 2 years ago by xiaohuli-45
  0

• The INS is not merged.

  #179 opened 2 years ago by wangyzh
  0

• make union

  #178 opened 2 years ago by lmanchon
  2

• simreads long runtime

  #177 opened 2 years ago by weilu1998
  2

• NUlls for sample names after merging VCFs

  #175 opened 2 years ago by maxineliu
  5

• INFO Field

  #174 opened 2 years ago by Akazhiel
  0