structural-variations

There are 13 repositories under structural-variations topic.

fritzsedlazeck/Sniffles
Structural variation caller using third generation sequencing
Language:Python559 26 48493
Illumina/manta
Structural variant and indel caller for mapped sequencing data
Language:C++409 40 302154
fritzsedlazeck/SURVIVOR
Toolset for SV simulation, comparison and filtering
Language:C++355 12 21147
philres/ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Language:C++292 22 9940
walaj/svaba
Structural variation and indel detection by local assembly
Language:C++233 17 13545
starskyzheng/panpop
Application of pan-genome for population
Language:Perl94 2 618
czc/nb_distribution
novoBreak: local assembly for breakpoint detection in cancer genomes
Language:Perl26 5 116
pk7zuva/Circle_finder
Micro DNA identification
Language:Shell22 5 913
fritzsedlazeck/SURVIVOR_ant
A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
Language:HTML13 2 132
micahvista/MAMnet
MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data.
Language:Python7 1 102
jasonwong-lab/smk_sv
A snakemake pipeline to call structure variants from ONT data
Language:Python2 2 00
meiers/thesis
PhD thesis
Language:TeX2 3 10
vborjesson/SVenX
Pipeline for SV detection using 10X genomics data
Language:Python2 0 02