Illumina/manta

Issues

• Installation issue (possible bug - library_version_type/ libdeflate should be from source)

  #313 opened a year ago by hongsilv
  0

• Why is START and END the same in the diploidSV.vcf.gz?

  #312 opened a year ago by robertzeibich
  0

• Failure to call well-known fusions on WES samples

  #311 opened a year ago by maximus3219
  0

• Split and spanning reads

  #285 opened 2 years ago by dmaziec
  1

• What is the benefit of the stats folder? Are some structural variants more relevant than others in the candidateSV.vcf file??

  #310 opened 2 years ago by robertzeibich
  0

• Manta currently handles paired-end (FR) reads only.

  #309 opened 2 years ago by hanqin580230
  2

• No Quality of Filter scoring for haploid genome

  #308 opened 2 years ago by ABediSilva
  0

• denovo_scoring.py extension - failure to read sample IDs in VCF

  #292 opened 2 years ago by McClatcheyM
  4

• --exome: command not found & bin/configManta.py: No such file or directory

  #307 opened 2 years ago by yr542
  0

• Get STRAND INFO in the vcf output

  #306 opened 2 years ago by Sreelekshmi-291
  0

• Problem finding .bed.gz.tbi index file with --callRegions

  #305 opened 2 years ago by lunalvan
  0

• Does Manta support 10x linked-read sorted bam files?

  #280 opened 3 years ago by goldpm1
  3

• Failed to complete command task: 'getAlignmentStats_generateStats_000'

  #274 opened 3 years ago by zetamui
  3

• Know SV can not detected by manta

  #294 opened 2 years ago by iskysinger
  3

• merge the two lines translocation(BND) records into one line

  #303 opened 2 years ago by Qijie0615
  0

• Population-scale SV merging does not produce 0/0 genotypes

  #302 opened 2 years ago by DomManou
  0

• How extract gene fusion information through manta`s output based on DNA-seq data

  #301 opened 2 years ago by dfc-1931475
  1

• No reads passing filters for dragmap-aligned bams

  #299 opened 2 years ago by Rohan-Abraham
  0

• [Question] How does Manta handle PCR duplicates?

  #291 opened 2 years ago by tbaker18
  1

• Error when running debugSingleSV

  #298 opened 2 years ago by wongwsw
  0

• Depth based exclusion process question

  #297 opened 2 years ago by hayeon-pak
  0

• Error: Unhandled Exception in TaskRunner-Thread-masterWorkflow

  #295 opened 2 years ago by georgiesamaha
  1

• Errors in MantaDemoAnalysis.py

  #296 opened 2 years ago by HeejunJang
  0

• isEmail function in run script makes Manta hang

  #293 opened 2 years ago by holtgrewe
  0

• why my VCF file generated with manta is missing genotype information

  #261 opened 4 years ago by Giuseppe1995
  4

• [Question]: Is ARM64 architecture supported ?

  #289 opened 2 years ago by julien-faye
  1

• Support pair-end 100 Pb sequencing data

  #290 opened 2 years ago by zhoudreames
  0

• Versioning on conda

  #287 opened 2 years ago by dmaziec
  1

• [ERROR] Failed to complete command task: 'generateCandidateSV_0000' with taskExitCode -9

  #275 opened 3 years ago by Mirror-fish
  3

• The orientation of structural variations

  #286 opened 2 years ago by cauliyang
  0

• Fail to open existing file

  #283 opened 3 years ago by elcortegano
  2

• generateCandidateSV error: Unexpected split read alignment input condition

  #262 opened 4 years ago by jbalberge
  1

• Impossible to install manta-0.26.0

  #282 opened 3 years ago by NstVasileva
  0

• SV calling on chrMT

  #281 opened 3 years ago by marc-sturm
  0

• No FORMAT field in the output vcf file

  #279 opened 3 years ago by Abusamra
  0

• Overlapping SVs occur in the same sample

  #278 opened 3 years ago by jxcao98
  0

• Too many homozygous variants

  #277 opened 3 years ago by astulaaa
  0

• [ERROR] 'generateCandidateSV_0000' error code: 1

  #276 opened 3 years ago by zhiyongli1995
  1

• [ERROR] Failed to complete command task: 'generateCandidateSV_0000' , error code: 1 in germline samples analysis

  #272 opened 3 years ago by HZAUzyz
  1

• [WorkflowRunner] [ERROR] Received termination signal, shutting down running tasks...

  #273 opened 3 years ago by siqi-zZ
  0

• Manta installation error

  #271 opened 3 years ago by Kh0iHuynh
  0

• No module named configBuildTimeInfo

  #270 opened 3 years ago by boboshaq
  0

• No python2 interpreter found

  #269 opened 3 years ago by boboshaq
  0

• fail to run " python runWorkflow.py " and "GetAlignmentStats ERROR"

  #267 opened 3 years ago by lx-1011
  1

• conda : missing runWorkflow.py file

  #268 opened 3 years ago by manolis2023
  1

• Clarification on variant IDs and EVENT tags

  #266 opened 3 years ago by kmegq
  0

• CMake configure incompatible with Boost CMake config files

  #265 opened 3 years ago by Flamefire
  0

• Invalid/problematic use of CMake variables in if-conditions

  #264 opened 3 years ago by Flamefire
  0

• Tumor -only Analysis error

  #263 opened 3 years ago by heweihuang
  0

• Does Manta detect fold-back inversions?

  #260 opened 4 years ago by weishwu
  0