georgiesamaha
Bioinformatics Group Lead at Sydney Informatics Hub, working with Australian BioCommons.
Sydney Informatics Hub, University of Sydney
Pinned Repositories
action-tests
BioinformaticsResources
List of tools and quick commands for various bioinformatics methods and datasets
biowasm
WebAssembly modules for genomics
Commandline_bioinformatics
One line commands for bioinformatics
configBuilder-nf
Nextflow config builder scripts for supported HPC infrastructures.
configs
Config files used to define parameters specific to compute environments at different Institutions
Ev1_SelectionMetaAnalysis
Vignette and research project developed under the AES ERC Networking Grant Scheme.
fq2vcf
Bash scripts for fastq to vcf pipeline, written for USyd Artemis HPC.
RentScraper
Scrapes rental listings from https://www.auhouseprices.com
Bioinformatics
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.
georgiesamaha's Repositories
georgiesamaha/configBuilder-nf
Nextflow config builder scripts for supported HPC infrastructures.
georgiesamaha/fq2vcf
Bash scripts for fastq to vcf pipeline, written for USyd Artemis HPC.
georgiesamaha/RentScraper
Scrapes rental listings from https://www.auhouseprices.com
georgiesamaha/action-tests
georgiesamaha/BioinformaticsResources
List of tools and quick commands for various bioinformatics methods and datasets
georgiesamaha/biowasm
WebAssembly modules for genomics
georgiesamaha/Commandline_bioinformatics
One line commands for bioinformatics
georgiesamaha/configs
Config files used to define parameters specific to compute environments at different Institutions
georgiesamaha/Ev1_SelectionMetaAnalysis
Vignette and research project developed under the AES ERC Networking Grant Scheme.
georgiesamaha/georgiesamaha
georgiesamaha/juicer
PBS version of https://github.com/aidenlab/juicer for Flashlite HPC
georgiesamaha/kris_kringle_simulator
Pull names out of a hat for kris kringle with this python script
georgiesamaha/MyDockerfiles
Bioinformatics dockerfiles
georgiesamaha/georgie-test-nf
georgiesamaha/georgieCV
georgiesamaha/Intros
georgiesamaha/nf-core_tools
Testing use of nf-core tools for automated testing of workflows
georgiesamaha/nf-coreBenchmark
Benchmarking scripts and config testing
georgiesamaha/ProbeRemap
Map SNP positions to a supplied reference assembly using BLAST. Filter results for best hit. Output in plink format.
georgiesamaha/quartoCV
georgiesamaha/shpc-registry
A remote registry for Singularity Registry HPC 🖊️
georgiesamaha/website
Nextflow public web site