Sydney Informatics Hub
The Sydney Informatics Hub is a Core Research Facility of the University of Sydney, providing training and expertise on research data, analysis and computing.
University of Sydney, Sydney Australia
Pinned Repositories
aigis
Tools for aerial and satellite imagery acquisition, processing, annotation, and analysis using artificial intelligence
Bioinformatics
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
copy_xlsx_styles
Tool to copy excel styles from an exemplar to a dumped data worksheet
dataharvester
Preprocess, aggregate, visualise and download geospatial data from a range of Australian (and international) data sources
Fastq-to-BAM
Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi
Shotgun-Metagenomics-Analysis
Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
Somatic-ShortV
stats-resources
SIH Statistics resources
tidbits
SIH's "tech tidbits" blog for sharing useful tools and tips
usydColours
University of Sydney colour palettes for ggplot2
Sydney Informatics Hub's Repositories
Sydney-Informatics-Hub/stats-resources
SIH Statistics resources
Sydney-Informatics-Hub/usydColours
University of Sydney colour palettes for ggplot2
Sydney-Informatics-Hub/aigis
Tools for aerial and satellite imagery acquisition, processing, annotation, and analysis using artificial intelligence
Sydney-Informatics-Hub/Module3R
Learn Machine Learning in the browser or locally in your RStudio IDE with interactive tutorials
Sydney-Informatics-Hub/Gen3-data-dictionary-dev
Sydney-Informatics-Hub/langchainlaw
Langchain for classifying judgments
Sydney-Informatics-Hub/LLM-LCT-sequencing
AI Semantic Insights: LLM Toolkit for Analysing Educational Practices and Knowledge Building.
Sydney-Informatics-Hub/nswcaselaw
Python module for searching and downloading judgments from NSW CaseLaw
Sydney-Informatics-Hub/tidbits
SIH's "tech tidbits" blog for sharing useful tools and tips
Sydney-Informatics-Hub/Parabricks-Genomics-nf
Scalable Nextflow implementation of Parabricks genomics workflow.
Sydney-Informatics-Hub/ables
Australian BioCommons Leadership Share (ABLeS) documentation
Sydney-Informatics-Hub/all-the-folds-and-some
Testing various protein modelling tools
Sydney-Informatics-Hub/ANZAC_neurogenetics_Gadi_guide
Sydney-Informatics-Hub/Bio-toolkit
Utility scripts and templates for public bioinformatics work
Sydney-Informatics-Hub/EDAinPy
Sydney-Informatics-Hub/hansard-rights-data-vis
Data visualisation of UK Hansard data using Observable Framework
Sydney-Informatics-Hub/Heurist-Integration
Heurist Integration Project
Sydney-Informatics-Hub/heurist-ldaca
Code for prepping Heurist RO-Crates for LDaCA conformance
Sydney-Informatics-Hub/juxtorpus
Sydney-Informatics-Hub/knowledgebase
Content for linking to USYD knowledgebase
Sydney-Informatics-Hub/ldac-profile
LDAC specific RO Crate Profile
Sydney-Informatics-Hub/Nextflow_DSL2_template
Template for creating Nextflow DSL2 pipelines
Sydney-Informatics-Hub/Nextflow_DSL2_template_guide
Self-directed materials for using the Nextflow DSL2 template
Sydney-Informatics-Hub/ONT-bacpac-nf
Sydney-Informatics-Hub/ResearchPulseAI
AI-driven Research Impact Assessment Tool and Case Study Generator for NSW Health
Sydney-Informatics-Hub/rnaseqOct23_Testing
This document is for addressing issues encountered when preparing for the Oct23 nf-core/rnaseq workshop
Sydney-Informatics-Hub/sih-github-dashboard
A dashboard displaying contributions to repositories within the SIH organisation
Sydney-Informatics-Hub/spacy-explain
This is an explainer notebook for SpaCy Part-of-Speech, Part-of-Speech (fine-grained), and Dependency tags
Sydney-Informatics-Hub/training-calendar-scraper
Scrape the SIH training calendar and generate HTML for use in the newsletter
Sydney-Informatics-Hub/training_dresa
This repository will host the csv files for DReSA export