Sydney-Informatics-Hub/Shotgun-Metagenomics-Analysis

Issues

• assemble_make_input.sh

  #33 opened 3 months ago by ozge81
  2

• problem finding modules

  #32 opened 5 months ago by AndreaQ7
  1

• Downstream Analysis Feature Pack

  #2 opened 3 years ago by hlydecker
  2

• Add gene prediction

  #9 opened 2 years ago by calizilla
  1

• Add resistome

  #10 opened 2 years ago by calizilla
  1

• Create table of contents

  #15 opened 2 years ago by calizilla
  1

• Create workflow diagram

  #16 opened 3 years ago by calizilla
  1

• Assembly output directories

  #12 opened 3 years ago by calizilla
  1

• Add antimicrobial resistance genes analysis

  #6 opened 3 years ago by calizilla
  1

• Add group-level output for 'Filter ARGs by coverage and identity'

  #14 opened 3 years ago by calizilla
  1

• Order of markdup within pipeline

  #13 opened 3 years ago by calizilla
  1

• Add insertion sequence element discovery

  #7 opened 3 years ago by calizilla
  1

• Add functional profiling

  #8 opened 3 years ago by calizilla
  1

• Add abundance estimation

  #5 opened 3 years ago by calizilla
  1

• Add speciation

  #4 opened 3 years ago by calizilla
  1

• Host Contamination

  #3 opened 3 years ago by hlydecker
  1