bioconda
There are 46 repositories under bioconda topic.
MultiQC/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
fritzsedlazeck/Sniffles
Structural variation caller using third generation sequencing
bactopia/bactopia
A flexible pipeline for complete analysis of bacterial genomes
vanheeringen-lab/genomepy
genes and genomes at your fingertips
fritzsedlazeck/SURVIVOR
Toolset for SV simulation, comparison and filtering
philres/ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
rnnh/bioinfo-notebook
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
linnabrown/run_dbcan
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
althonos/pyrodigal
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
telatin/seqfu2
:rocket: seqfu - Sequece Fastx Utilities
urmi-21/pyrpipe
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Clinical-Genomics/chanjo
Chanjo provides a better way to analyze coverage data in clinical sequencing.
telatin/covtobed
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
cmkobel/assemblycomparator2
🦠📇 Genomes to report pipeline - for Bacteria and Archaea
ypriverol/containers-rules-manuscript
Recommendations to contenarized your bioinformatics software
mpc-bioinformatics/ProtGraph
ProtGraph - A Graph-Generator for Proteins
burkesquires/Build-a-Reproducible-Jupyter-Workflow-From-Scratch
Build a Reproducible Jupyter Workflow From Scratch (2017 NIH Hour of Code)
BioContainers/edu
BioContainers Documentation.
MonashBioinformaticsPlatform/bioconda-tutorial
A quick overview of how to use Bioconda, and create recipes
gifford-lab/deepaccess-package
Methods for training and interpretation of an ensemble of neural networks for multi-task functional prediction of accessibility or histone modifications from DNA sequence.
Quansight-Labs/czi-conda-forge-mgmt
🚀 Top level project management for conda-forge CZI grant
telatin/qax
Qiime2 Artifact eXtractor
bioconda/bioconda-paper
Data analysis related to the bioconda paper
NordicESMhub/containers
Containers for running ESM related tools
asadprodhan/A-beginner-s-guide-to-Bioinformatics
A beginner’s guide to Bioinformatics
bioconda/bioconda-plots
Generating various plots for the bioconda homepage
jlanga/exfi
Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtools
mv-lab/dna-proto-workflow
Snakemake ProtoWorkflow for DNA Analysis.
dfloresDIL/MEGA
MEGA ATAC-seq Workflow implementation
sk-sahu/PGRB
Practical Guide to Reproducibility in Bioinformatics (Work In Progress)
fatmakahveci/milestone
bacterial strain identification
Genometric/TVQ
Contains scripts to study the impact of publishing software to package management systems on their scholarly recognition.
lauralwd/Azolla_genus_metagenome
This project aims do describe and explore the metagenomes of fern species of the genus Azolla.
bio-TAGI/Hackathon
Analysis of mutations at codon 625 of SF3B1 gene in uveal melanoma
jhammelman/deepaccess-package
Training an interpretation of ensemble of convolutional neural networks for multi-task functional genomic classification tasks.
lucianhu/Bash-script-DNA-Sequence
Linux command-line to analyse next-generation sequencing (NGS) data