setshabaTaukobong
Bioinformatics Scientist based at the National Institute for Communicable Diseses, South Africa
National Institute for Communicable DisesesJohannesburg, South Africa
Pinned Repositories
nanomonsv
SV detection tool for nanopore sequence reads
dorado
Oxford Nanopore's Basecaller
medaka
Sequence correction provided by ONT Research
modkit
A bioinformatics tool for working with modified bases
KMC
Fast and frugal disk based k-mer counter
Genome-Assembly-Pipeline-Nextflow
Heatmap-Matrix
Heatmap matrix script that generates a restructured dataframe from a variant calling output file for conditional formatting in Excel.
Mutational-Dotplot
SARS-Cov-2 mutational dot plot that identifies and shows the periods in which certain mutations of interest have emerged and continue to appear.
abricate
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
setshabaTaukobong's Repositories
setshabaTaukobong/Genome-Assembly-Pipeline-Nextflow
setshabaTaukobong/Heatmap-Matrix
Heatmap matrix script that generates a restructured dataframe from a variant calling output file for conditional formatting in Excel.
setshabaTaukobong/Mutational-Dotplot
SARS-Cov-2 mutational dot plot that identifies and shows the periods in which certain mutations of interest have emerged and continue to appear.