refresh-bio/KMC

Issues

• KMC froze at Stage 1: 2%

  #242 opened a month ago by zhangrengang
  0

• incompatibility with tab character in line1 of FASTQ

  #241 opened 2 months ago by iorga
  0

• smudge_pairs: command not found Error

  #240 opened 3 months ago by setshabaTaukobong
  2

• Seems that only one-line FASTA files are supported

  #239 opened 3 months ago by shenwei356
  2

• v3.2.4 stalls on very large dataset but v3.2.1 does not

  #238 opened 4 months ago by peter-kanvas
  2

• How to merge k-mer frequencies

  #237 opened 5 months ago by GLking123
  9

• Storing k-mers without counters

  #236 opened 5 months ago by peter-kanvas
  2

• Not processing all reads when limiting number of threads

  #235 opened 5 months ago by nikostr
  3

• Dump with empty output

  #234 opened 6 months ago by MagpiePKU
  2

• munmap_chunk(): invalid pointer on ubam file - KMC crashes on BAM with long reads

  #230 opened 8 months ago by tbenavi1
  4

• T2T genome kmer count problem

  #233 opened 7 months ago by liujilei156231
  2

• when trying use kmc analyze .fasta file

  #231 opened 8 months ago by speed090
  2

• kff to jf (or vice versa)

  #228 opened 10 months ago by JosephLalli
  2

• kmc_tools simple intersect & union, not considering reverse complement?

  #227 opened 10 months ago by zhaotao1987
  3

• kmc_tools always in in1: 0%

  #194 opened 2 years ago by zhangrengang
  9

• smudge pairs install

  #224 opened a year ago by zhangyuxin1012
  1

• KMC abrubtly not working

  #222 opened a year ago by jrostudent
  13

• Empty output

  #223 opened a year ago by mesti90
  2

• KMC yields an error on fixed width fasta files

  #214 opened 2 years ago by mesti90
  4

• kmc_tools filter does not accept large FASTA input

  #221 opened a year ago by mscharmann
  1

• how to create multiple kmc db output as per @input_file_list.

  #220 opened a year ago by bio-developer
  1

• kmc_tools dump not creating file

  #219 opened a year ago by kzuckerman
  3

• How to get kmer count of kmc output database

  #200 opened a year ago by jessicabonnie
  8

• Run stages separately

  #218 opened a year ago by tbenavi1
  3

• Small suggestion

  #217 opened a year ago by KBT59
  3

• Python 3.11 support

  #216 opened a year ago by tbenavi1
  0

• Error: some error while reading fasta file, please contact authors (kmc_core/fastq_reader.cpp: 704)

  #213 opened 2 years ago by durrantmm
  1

• When compiling make on the arm platform, the following error occurs, using the clang and clang++ compilers

  #212 opened 2 years ago by 123xyl
  21

• Apple Silicon Build Issue

  #201 opened 2 years ago by jeremiahpslewis
  6

• how to install kmc on arm platform ，the compiled KMC binary will not be used on ARM

  #209 opened 2 years ago by 123xyl
  2

• how to install kmc

  #210 opened 2 years ago by 123xyl
  3

• Space shortage for output not reported

  #211 opened 2 years ago by jamshed
  0

• request: specify several input files (paired-end reads)

  #208 opened 2 years ago by rderelle
  3

• KMC hangs

  #206 opened 2 years ago by jodyphelan
  1

• kmc stuck at Stage 1: XX%(less than 100%)

  #207 opened 2 years ago by fanmiaowang
  1

• trying to increase maximal value of a counter (using -cs)

  #205 opened 2 years ago by benliu5085
  3

• Bug with extra large `k`-mers

  #204 opened 2 years ago by jamshed
  6

• Error: unknown exception

  #203 opened 2 years ago by jiyoungAn
  1

• have no peak

  #202 opened 2 years ago by JXAUDZF
  11

• Couldn't run KMC after troubleshooting with issue #176

  #187 opened 3 years ago by naahraissa
  14

• KMC reads the sequences from standard input

  #199 opened 2 years ago by shokrof
  2

• the use of the -ci parameter

  #198 opened 2 years ago by SUPERI-SAI
  3

• Error: cannot open file: /path/xx.fq.gz

  #197 opened 2 years ago by xibeixingchen
  3

• std::thread::hardware_concurrency() should not be used

  #196 opened 2 years ago by jbd
  0

• Windows release file appears broken

  #195 opened 2 years ago by rcedgar
  1

• How to hack KMC source to implement variant of k-mer counting

  #193 opened 2 years ago by rcedgar
  4

• kmc_tools info in help message

  #192 opened 2 years ago by MihaiPop
  0

• same dataset, but different results using KMC and Jellyfish

  #190 opened 3 years ago by Youpu-Chen
  4

• Error Running Make

  #189 opened 3 years ago by camtelope
  6

• Dumping minimizers/superKmers/signatures

  #188 opened 3 years ago by mr-eyes
  3