REFRESH Bioinformatics Group

Pinned Repositories

agc
Assembled Genomes Compressor
Language:C++160 6 1713
colord
A versatile compressor of third generation sequencing reads.
Language:C++51 3 914
DSRC
DSRC - DNA Sequence Reads Compressor
Language:C++57 8 2219
FAMSA
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
Language:C++155 7 3827
KMC
Fast and frugal disk based k-mer counter
Language:C++300 9 22377
kmer-db
Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).
Language:C++89 6 2618
PHIST
Phage-Host Interaction Search Tool
Language:C++26 3 102
SPLASH
Language:C++77 6 3611
vclust
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
Language:Python89 3 184
Whisper
Language:C++24 3 154

REFRESH Bioinformatics Group's Repositories

refresh-bio/KMC
Fast and frugal disk based k-mer counter
Language:C++300 9 22377
refresh-bio/agc
Assembled Genomes Compressor
Language:C++160 6 1713
refresh-bio/FAMSA
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
Language:C++155 7 3827
refresh-bio/kmer-db
Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).
Language:C++89 6 2618
refresh-bio/vclust
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
Language:Python89 3 184
refresh-bio/SPLASH
Language:C++77 6 3611
refresh-bio/DSRC
DSRC - DNA Sequence Reads Compressor
Language:C++57 8 2219
refresh-bio/colord
A versatile compressor of third generation sequencing reads.
Language:C++51 3 914
refresh-bio/PHIST
Phage-Host Interaction Search Tool
Language:C++26 3 102
refresh-bio/Whisper
Language:C++24 3 154
refresh-bio/VCFShark
Language:C++18 1 12
refresh-bio/FaStore
FaStore - high-performance FASTQ files compressor
Language:C++17 5 58
refresh-bio/fqsqueezer
FQSqueezer - FASTQ compressor based on k-mer statistics
Language:C++16 1 1
refresh-bio/ORCOM
Overlapping Reads COmpression with Minimizers
Language:C++16 3 14
refresh-bio/GTC
GenoTypes Compressor
Language:C++15 3 98
refresh-bio/clusty
Language:C++12 2 33
refresh-bio/protestar
Protein Structure Archiver
Language:C++12 2 0
refresh-bio/RADULS
Ultra fast MSD radix sorter
Language:C++11 4 25
refresh-bio/RECKONER
Language:C++9 2 51
refresh-bio/GDC2
Genome Differential Compressor 2
Language:C++7 2 14
refresh-bio/CoMSA
Compressor of multiple sequence alignments data
Language:C5 1 1
refresh-bio/GTShark
GTShark: Genotype compression in large projects
Language:C++3 2 54
refresh-bio/LZ-ANI
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes
Language:C++2 2 3
refresh-bio/MuGI
Multiple Genome Index
Language:C++1 2 11
refresh-bio/QuickProbs
Accurate algorithm for the multiple sequence alignment.
Language:C++1 2 41
refresh-bio/bkc
Language:C++1 1
refresh-bio/microbialSPLASH
Language:Python
refresh-bio/ref-utils
Language:C++0 0
refresh-bio/TGC
Thousands Genome Compressor
Language:C++2 11