mr-eyes
Postdoctoral Researcher at the Dennis Lab | PhD in Computer Science
University of California, DavisDavis, CA
Pinned Repositories
DBRetina
DBRetina python package
kmerDecoder
Extract kmers, skipmers, minimizers.
kProcessor
kProcessor: kmers processing framework.
kSpider
A simple yet powerful sequence clustering tool.
denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
genoFreq
summarize and visualize the genotypes categories per sample in a VCF file
NU-Thesis-Template
Nile University Thesis Template
sourmash_plugin_dehash
sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
mr-eyes's Repositories
mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
mr-eyes/sourmash_plugin_dehash
mr-eyes/duplicate_images_detector
Detect duplicate images and view the distinct in a web app
mr-eyes/sourmash_plugin_extract_errors
Find kmers that appeared once in a pool of sourmash signatures
mr-eyes/sourmash_plugin_subtract_and_inflate
Subtract two signatures and generate an inflated signature (recover abundance)
mr-eyes/sra_size_plot
Up-to-date SRA growth size visualization
mr-eyes/2023-decontamination
mr-eyes/2023-kSpider-clustering
mr-eyes/2024-07-1KG-analysis
Analysis of the 1KG project
mr-eyes/2024-fracminhash-viz
mr-eyes/2024-snakemake-qualimap
mr-eyes/2024-sra-sourmash
A simple snakemake workflow to download and sketch SRA sequencing runs
mr-eyes/bioconda-recipes
Conda recipes for the bioconda channel.
mr-eyes/confidata
A secure distributed file system with multi-layered protection and dual authorization.
mr-eyes/cv
mr-eyes/dumb_Index
better don't have a look, this is boring
mr-eyes/ecs220_hw_template
mr-eyes/gatherly
Ultrafast gRPC-based decentralized k-mer query system
mr-eyes/graph_indexer
mr-eyes/hashspace_parallel_indexing
multithreading indexing by splitting the hash space
mr-eyes/hugo-PaperMod
A fast, clean, responsive Hugo theme.
mr-eyes/kDecontaminer
mr-eyes/kp2_indexing
mr-eyes/kp2_recipes
mr-eyes/kSpider_samples_QC
mr-eyes/next-netlify-starter
mr-eyes/pyo3_branchwater
Python plugin for fast search & gather
mr-eyes/reads_decontamination-2022
mr-eyes/sourmash_plugin_commonhash
sourmash plugin to filter hashes/k-mers by presence across many sketches
mr-eyes/test-aggiedown