Pinned Repositories
alv
A console-based alignment viewer
binp29-git
bioconda-recipes
Conda recipes for the bioconda channel.
developer-utilities
Zetkin developer utility scripts
DifCover
The DifCover pipeline aims to identify regions in a reference genome for which the read coverage of a sample1 to the reference is significantly different from the read coverage of a sample2
dna-seq-deepvariant-glnexus-variant-calling
A Snakemake workflow for variant calling with DeepVariant, and optionally joint variant calling using GLnexus.
dna-seq-variant-calling
Intro_to_R_2022
Exercise material and slides for the Evomics Workshop on Genomics Introduction to R.
kGWASflow
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
reversing_statview
nikostr's Repositories
nikostr/dna-seq-deepvariant-glnexus-variant-calling
A Snakemake workflow for variant calling with DeepVariant, and optionally joint variant calling using GLnexus.
nikostr/alv
A console-based alignment viewer
nikostr/binp29-git
nikostr/bioconda-recipes
Conda recipes for the bioconda channel.
nikostr/developer-utilities
Zetkin developer utility scripts
nikostr/DifCover
The DifCover pipeline aims to identify regions in a reference genome for which the read coverage of a sample1 to the reference is significantly different from the read coverage of a sample2
nikostr/dna-seq-variant-calling
nikostr/Intro_to_R_2022
Exercise material and slides for the Evomics Workshop on Genomics Introduction to R.
nikostr/kGWASflow
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
nikostr/LayerNormLSTM
nikostr/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
nikostr/nikostr.github.io
nikostr/pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
nikostr/reversing_statview
nikostr/parquetize
R package that allows to convert databases of different formats to parquet format
nikostr/read-mapping
Snakemake module for read mapping using BWA-MEME, pbmm2 or minimap2. Experimental.
nikostr/SexFindR
nikostr/Skmer
Fast and accurate tool for estimating genomic distances between genome-skims
nikostr/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
nikostr/snakemake-workflow-catalog
A statically generated catalog of available Snakemake workflows
nikostr/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
nikostr/stract-optics
nikostr/tldr
📚 Collaborative cheatsheets for console commands