Pinned Repositories
smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
genomescope2.0
Reference-free profiling of polyploid genomes
GR
Genome Research template for LaTeX
HetSmoother
KMC
Fast and frugal disk based k-mer counter
Kraken-SBT
lphash
Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
merfin
Evaluate variant calls and its combination with k-mer multiplicity
NHA_SV
SVCollector
Method to optimally select samples for validation and resequencing
tbenavi1's Repositories
tbenavi1/genomescope2.0
Reference-free profiling of polyploid genomes
tbenavi1/KMC
Fast and frugal disk based k-mer counter
tbenavi1/Kraken-SBT
tbenavi1/GR
Genome Research template for LaTeX
tbenavi1/HetSmoother
tbenavi1/lphash
Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
tbenavi1/merfin
Evaluate variant calls and its combination with k-mer multiplicity
tbenavi1/NHA_SV
tbenavi1/RetroDetector
A pipeline for identifying fixed and segregating retrocopies from short- and long-read whole genome sequencing data.
tbenavi1/SVCollector
Method to optimally select samples for validation and resequencing
tbenavi1/Salzberg
tbenavi1/telogator
A method for measuring chromosome-specific telomere length from long reads
tbenavi1/Telomere_Length
This repository contains the pipeline for assessing telomere length from "Chromosome specific telomere lengths and the minimal functional telomere revealed by nanopore sequencing"
tbenavi1/teltools
Suite of tools to analyze telomeres