jessicabonnie
I am a PhD candidate in Computer Science at Johns Hopkins University. I study computational genetics in Ben Langmead's lab.
Johns Hopkins University
Pinned Repositories
2015-03-05-uvasom
UVA's SWC for Biomedical Researchers
bc
Template for Software Carpentry bootcamp site repository.
bedshift_analysis
BioThingsClient.R
This is a unified R client for BioThings APIs (http://biothings.io)
cisEQTL_R
cobind
collocation analysis of genomics regions
Computer_Networks_Spring21
dandd
Tool to estimate deltas for sequence sets and answer questions about relative contribution
pTyrSignalComparison
CPHG Workspace
shiny-court-grapher
Interactive Graphing of VA Mental Health Hearing Data
jessicabonnie's Repositories
jessicabonnie/dandd
Tool to estimate deltas for sequence sets and answer questions about relative contribution
jessicabonnie/bedshift_analysis
jessicabonnie/BioThingsClient.R
This is a unified R client for BioThings APIs (http://biothings.io)
jessicabonnie/cobind
collocation analysis of genomics regions
jessicabonnie/Computer_Networks_Spring21
jessicabonnie/CS601_633
Intro to Algorithms, Fall 2019
jessicabonnie/cumbof_minimizers
A Python package for extracting minimizers from sequence data
jessicabonnie/dandd_experiments
Delta-Delta Experiments
jessicabonnie/dashing2
Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
jessicabonnie/E-Vote-Django
Elect-ron is a full featured online voting app with features such as poll creation, bulk users, eligibility check for voters.
jessicabonnie/EN601647_final_scan_contaminants
jessicabonnie/evote
A system for secure, trusted, and verifiable voting on the web
jessicabonnie/Farewell_CPHG
Code written at the Center for Public Health Genomics
jessicabonnie/GTExV6PRareVariation
Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript
jessicabonnie/GWAS-Pipedream
Pipeline to perform basic SNP, gender, and population QC on genomic data.
jessicabonnie/hammock
experiment repo for bed sketching approach hammock
jessicabonnie/MA553_291
Linear Algebra and Differential Equations, Fall 2019
jessicabonnie/MLexploreR
Acts as a lightweight machine learning exploration portal, currently focused on structured data alone. A user can test a variety of machine learning models on data, while also assessing various features and statistical measures of the data.
jessicabonnie/my-reps
:busts_in_silhouette: Enter your address to find your elected representatives. Powered by the Google Civic Information API
jessicabonnie/myvariant.info
MyVariant.info: A BioThings API for human variant annotations
jessicabonnie/realviacauchy.github.io.faux
jessicabonnie/RSocrata
Provides easier interaction with Socrata open data portals http://dev.socrata.com. Users can provide a 'Socrata' data set resource URL, or a 'Socrata' Open Data API (SoDA) web query, or a 'Socrata' "human-friendly" URL, returns an R data frame. Converts dates to 'POSIX' format. Manages throttling by 'Socrata'.
jessicabonnie/shiny-examples
jessicabonnie/shinyLessonPlan
jessicabonnie/sketch
C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings
jessicabonnie/starter-hugo-academic
🎓 创建一个学术网站. Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify.
jessicabonnie/va-datathon-2017
Virginia Datathon on the Opioid Epidemic
jessicabonnie/Watershed
Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq
jessicabonnie/website
jessicabonnie/workshops-1
Bioconnector Workshops