Pinned Repositories
awesome
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
bio_scripts
Practical, reusable scripts for bioinformatics
brename
A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression
csvtk
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
gtdb-taxdump
GTDB taxonomy taxdump files with trackable TaxIds
kmcp
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
rush
A cross-platform command-line tool for executing jobs in parallel
seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
unikmer
a versatile toolkit for k-mers with taxonomic information
shenwei356's Repositories
shenwei356/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
shenwei356/csvtk
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
shenwei356/rush
A cross-platform command-line tool for executing jobs in parallel
shenwei356/awesome
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
shenwei356/taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
shenwei356/brename
A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression
shenwei356/kmcp
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
shenwei356/bio
A lightweight and high-performance bioinformatics package in Golang
shenwei356/perfect-bioinformatic-tools
What should perfect bioinformatic tools be like?
shenwei356/unikmer
a versatile toolkit for k-mers with taxonomic information
shenwei356/gtdb-taxdump
GTDB taxonomy taxdump files with trackable TaxIds
shenwei356/easy_qsub
Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.
shenwei356/taxid-changelog
NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.
shenwei356/bwt
Burrows-Wheeler Transform and FM-index in golang
shenwei356/ictv-taxdump
NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
shenwei356/kmers
bit-packed k-mers methods for Golang
shenwei356/pand
Bitwise AND on two byte-slices using SIMD instructions
shenwei356/stable
Streaming pretty text table for Golang
shenwei356/rust-practice
Some tools in Rust for learning
shenwei356/util
Golang utility packages
shenwei356/cluster_files
cluster files into multiple directories by creating symbolic links or moving files
shenwei356/shenwei356
shenwei356/swr
Wei Shen' R utilities
shenwei356/bioconda-recipes
Conda recipes for the bioconda channel.
shenwei356/seqkit2_benchmark
shenwei356/xopen
open files for buffered reading and writing in #golang
shenwei356/conda
conda recipes for my tools
shenwei356/golang-combinations
Golang library which provide an algorithm to generate all combinations out of a given string array.
shenwei356/mof-search
BLAST-like search across all pre-2019 bacteria on ordinary laptop and desktop computers within a few hours
shenwei356/pospop
Positional Population Count for Go