Issues
- 3
Prebuilt databases is no longer available
#46 opened by dnj000701 - 2
Merge kmcp profilings of multiple samples
#45 opened by DrYoungOG - 6
- 4
kmcp search is stucked
#43 opened by aababc1 - 1
coverage is greater than 100
#42 opened by wz115 - 5
Availability of old gtdb databases?
#41 opened by fplazaonate - 3
- 4
ETA missing when building KMCP index
#36 opened by ericvdtoorn - 3
- 2
Masking prophages in bacterial genomes before building database as Phanta does
#29 opened by shenwei356 - 2
Kmcp profile empty
#39 opened by sofstam - 3
TODO: save the search result into a serializing binary file for fast downstream parsing
#40 opened by shenwei356 - 9
Optimizing KMCP with HumGut
#38 opened by ericvdtoorn - 2
- 1
Report statistics of matched, unmatched reads
#33 opened by shenwei356 - 1
- 4
reporting proportion of unmatched reads
#20 opened by peterbjarke - 2
long read metagenomic profiling
#27 opened by JensUweUlrich - 3
KMCP database building tutorial
#25 opened by Cryphonectria - 4
Detecting closest reference in custom DB
#32 opened by jodyphelan - 2
How to specify multiple kmer values
#30 opened by mbhall88 - 2
- 2
Dealing with novel/non-sequenced species
#26 opened by mverce - 3
Profiling output table interpretation
#22 opened by lborcard - 6
- 3
CowTransfer link doesn't work
#24 opened by jamelee - 4
0.8.3: Fails on i386: 1 << 32 - 1 (untyped int constant 4294967295) overflows int
#19 opened by yurivict - 5
kmcp search crashed
#10 opened by zhanxw - 3
- 9
compiling/installing from source
#17 opened by jianshu93 - 2
QUESTION: Taxdump
#15 opened by alienzj - 4
Create an index without create the database
#18 opened by davidmaimoun - 9
Error when installing KMCP
#16 opened by davidmaimoun - 0
Automatically disable ambiguous-matches correction for complex communities with thousands of species
#13 opened by shenwei356 - 4
QUESTION: KMCP merge
#14 opened by alienzj - 2
Building database with MAGs
#12 opened by durrantmm - 3
A minor issue on console messages
#8 opened by zhanxw - 1
[website] broken links
#9 opened by telatin - 1
TODO: improve search results parsing by using a simplified version of strconv.ParseFloat
#6 opened by shenwei356 - 0
- 3
- 1
Read-level output format
#3 opened by sjaenick