taxonomic-profiling

There are 14 repositories under taxonomic-profiling topic.

  • sourmash

    sourmash-bio/sourmash

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    Language:Python482171.7k80

  • nf-core/ampliseq

    Amplicon sequencing analysis workflow using DADA2 and QIIME2

    Language:Nextflow189152356124
  • kmcp

    shenwei356/kmcp

    Accurate metagenomic profiling && Fast large-scale sequence/genome searching

    Language:Go18264813

  • nf-core/taxprofiler

    Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

    Language:Nextflow13215620638

  • JensUweUlrich/Taxor

    Fast and space-efficient taxonomic classification of long reads

    Language:C++432132
  • taxpasta

    taxprofiler/taxpasta

    TAXnomic Profile Aggregation and STAndardisation

    Language:Python344667

  • xinehc/melon

    Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes

    Language:Python33142

  • treangenlab/lemur

    Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

    Language:Python22341
  • meteor

    metagenopolis/meteor

    Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-level taxonomic profiling (Bacteria, Archaea and Eukaryotes), functional analysis and strain-level population structure inference.

    Language:Python144430

  • nf-core/detaxizer

    A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.

    Language:Nextflow1416795

  • PROBIC/mSWEEP

    mSWEEP High-resolution sweep metagenomics using fast probabilistic inference

    Language:C++134172

  • nf-core/createtaxdb

    Parallelised and automated construction of metagenomic classifier databases of different tools

    Language:Nextflow7166325

  • DavideScarpetta/taxonomic_profiling

    Metabarcoding analysis pipeline, using DADA2 and qiime2

    Language:Shell0200

  • hermidalc/dragonfish

    A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG

    Language:Python01250