PROBIC/mSWEEP

Issues

• Optimizing mSWEEP runs on large datasets

  #29 opened 2 months ago by EnriqueDoster
  3

• Reading plaintext alignments consumes a lot of memory (workaround inside)

  #24 opened 4 months ago by tmaklin
  4

• Automatically determine `--tol` to avoid numerical stability derived convergence issues on large input

  #25 opened 4 months ago by tmaklin
  0

• Feature request: report the fraction of unassigned reads

  #21 opened a year ago by jnalanko
  1

• Create a conda recipe for easy installation

  #8 opened a year ago by tmaklin
  1

• segmentation fault / persistent memory issues during build log likelihood array

  #20 opened a year ago by clb21565
  13

• Add option to read in a precomputed likelihood matrix

  #12 opened 2 years ago by tmaklin
  2

• Testing mSweep on C.jejuni data, questions for constructing a reference set

  #13 opened 3 years ago by mherold1
  3

• question about parameters for poppunk

  #9 opened 3 years ago by smb20200615
  2

• Add option to supply multiple clusterings for the same run

  #7 opened 3 years ago by tmaklin
  1

• Using the bootstrapping option (--iters) adds an extra line to the output abundances file

  #6 opened 3 years ago by tmaklin
  0

• Group indicators are not validated with Themisto input

  #4 opened 5 years ago by tmaklin
  0

• Installation problems

  #3 opened 6 years ago by harry-thorpe
  2

• Kallisto reference index for multi-contig assemblies

  #2 opened 6 years ago by aweimann
  1

• make fails

  #1 opened 6 years ago by aweimann
  3