Pinned Repositories
barcode-analyzer
bufboss
bwtCluster
Space-efficient clustering of metagenomic reads using the bidirectional Burrows-Wheeler transform
Hu4Rolls-2
kmer-lcs
LCSS
PolyamoriaSuomiBot
syotti
Minimum Bait Cover Toolkit Syotti.
VOMM
Space-efficient variable-order Markov models
WheelerSort
jnalanko's Repositories
jnalanko/syotti
Minimum Bait Cover Toolkit Syotti.
jnalanko/PolyamoriaSuomiBot
jnalanko/kmer-lcs
jnalanko/sbwt-rs
jnalanko/sbwt-rs-cli
jnalanko/SubsetWT-Experiments
Code used in the paper "Subset Wavelet Trees" for SEA 2023
jnalanko/SubsetWT
jnalanko/align
jnalanko/barcode_binner
jnalanko/bufboss_experiments
jnalanko/columba
Fast Approximate Pattern Matching using Search Schemes
jnalanko/compare_color_dumps
jnalanko/duplicate_removal
jnalanko/finimizers-rs
jnalanko/instanssi2024
jnalanko/jseqio
jnalanko/libsais-driver
jnalanko/mSWEEP
mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
jnalanko/rcgpar
c++ library for parallel and distributed estimation of mixture model components using variational inference.
jnalanko/sample-kmers
jnalanko/SBWT-kmer-counters
K-mer counting using SBWT
jnalanko/seqio
jnalanko/seqtools
jnalanko/simple-sds-sbwt
Simple succinct data structures (in Rust)
jnalanko/split_to_kmers
jnalanko/syotti2
jnalanko/themisto-remapper
jnalanko/themisto_tools
jnalanko/total_string_frequency
jnalanko/unitig_flipper