Pinned Repositories
barcode-analyzer
bufboss
bwtCluster
Space-efficient clustering of metagenomic reads using the bidirectional Burrows-Wheeler transform
Hu4Rolls-2
kmer-lcs
LCSS
PolyamoriaSuomiBot
syotti
Minimum Bait Cover Toolkit Syotti.
VOMM
Space-efficient variable-order Markov models
WheelerSort
jnalanko's Repositories
jnalanko/VOMM
Space-efficient variable-order Markov models
jnalanko/WheelerSort
jnalanko/bufboss
jnalanko/bwtCluster
Space-efficient clustering of metagenomic reads using the bidirectional Burrows-Wheeler transform
jnalanko/algopruju
jnalanko/bifrost
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
jnalanko/bioconda-recipes
Conda recipes for the bioconda channel.
jnalanko/BW4SA
Burrows-Wheeler transform for Sequence Analysis: a generic, practical, versatile library for implementing a variety of (bio)sequence analysis algorithms in succinct space.
jnalanko/cobs
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
jnalanko/cosmo
Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
jnalanko/DiscordCleanupBot
jnalanko/dynamicDBG
Practical Dynamic de Bruijn Graphs
jnalanko/JZipVIew
Ultra-simple and fast zipped JPEG viewer released under GPL
jnalanko/k_index
Work in progress: k-mer pseudoalignment
jnalanko/KMC
A fork of KMC used in Themisto
jnalanko/kseqpp
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
jnalanko/OoteaiPair
OoteaiPair
jnalanko/SBWT_experiments
jnalanko/sdsl-lite
Succinct Data Structure Library 2.0
jnalanko/slt_to_dot
A tool to print the suffix link tree of a file into stdout.
jnalanko/sshash
A compressed, associative, exact, and weighted dictionary for k-mers.
jnalanko/stb
stb single-file public domain libraries for C/C++
jnalanko/string_algorithms
Implementations of basic string algorithms in C++
jnalanko/TrivialWheelerBOSS
An educational C-implementation of the Wheeler BOSS structure
jnalanko/wunderdog_puzzle
Solution for the puzzle at http://wunderdog.fi/koodaus-pahkina-kesa-2015