annotation error
liufy11 opened this issue · 1 comments
liufy11 commented
when I use SURVIVOR_ant for vcf file containing BND detected by pbsv.
for example:
the annotation for
"pbsv.BND.scaffoldA09:61716239-scaffoldA07:3695888"
is
"total_Annotations=2;overlapped_Annotations=BnaC09T0514400ZS.exon5,cds.BnaC09T0514400ZS"
the vcf file shows translocation is from A09 to A07, why the annotation shows the translocation is related to C09? and there are too many errors like this in the annotation file for BND, but I didn't find this problem in annotation file for INS、DEL、DUP.
fritzsedlazeck commented
sorry I didnt had time/resources to maintain this code base. I am currently using VCFanno.
Thanks
Fritz