This program clusters orthologous proteins. It needs Python 2.7 or higher, MCL, and HMMER 3.
USAGE: MCLOC.py [-h] [-e EVA] [-s THR] [-c CHNK] p o
p: Directory containing all proteomes in fasta format. Each proteome should be in a separate file.
o: Path to the output file
-h, --help: Show help message and exit
-e EVA, --eva EVA: E-value threshold for phmmer
-s THR, --thr THR: Similarity threshold
-c CHNK, --chnk CHNK: Chunk size