Image Processing Tools ====================== ITK, MITK, ANTs, c3d Build Docker ======================= docker build -t iptools . Debug ===== docker run --entrypoint=/bin/bash --rm -it -u $(id -u):$(id -g) iptools Usage ===== docker run --entrypoint=/opt/itk/DicomSeriesReadImageWrite2 --rm -it --user $(id -u):$(id -g) -v $PWD/dicomdir/:/data/ -v $PWD:/out iptools:latest /data/ /out/image.nii.gz docker run --entrypoint=/opt/mitk/ImageDenoising/TotalVariationDenoisingImage --rm -it --user $(id -u):$(id -g) -v $PWD/:/data/ -v $PWD:/out iptools:latest /data/art.nii.gz /out/art.denoise.nii.gz dockerhub ========= docker login --username=fuentesdt docker tag f3dca8cda305 fuentesdt/iptools:latest docker push fuentesdt/iptools