Kleinman Lab

Analysis, tools, and software for functional genomics to understand cancer and brain development

McGill University

Pinned Repositories

braindex
A web portal for exploring scRNAseq data in the developing brain, including our in-house atlas of the E10-P6 forebrain and brainstem
Language:R0 4 541
chromswitch
An R/Bioconductor package for detecting chromatin state switches
Language:R0 1 00
chromswitch-analysis
Code and data to accompany the chromswitch paper, "chromswitch: A flexible method for detecting chromatin state switches" (Jessa and Kleinman, Bioinformatics, 2018)
Language:R0 1 00
cytobox
A toolbox for analysis and highly-customizable visualization of single cell data
Language:R4 2 32
G34-gliomas
Cell-of-origin analysis for "Histone H3.3G34-mutant interneuron progenitors co-opt PDGFRA for gliomagenesis" (Chen*, Deshmukh*, Jessa*, Hadjadj*, et al, Cell, 2020)
Language:HTML0 3 00
HGG-oncohistones
Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)
Language:HTML5 2 22
Parameterized_report
Parameterized report and interactive plot introduction and demo
Language:HTML0 5 00
sandbox
A sandbox to test our workflow
Language:R0 6 190
scCoAnnotate
Pipeline for consensus prediction of cell types in single-cell RNA sequencing data.
Language:R4 0 00

fungenomics/HGG-oncohistones
Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)
Language:HTML5 2 22
fungenomics/cytobox
A toolbox for analysis and highly-customizable visualization of single cell data
Language:R4 2 32
fungenomics/scCoAnnotate
Pipeline for consensus prediction of cell types in single-cell RNA sequencing data.
Language:R4 0 00
fungenomics/braindex
A web portal for exploring scRNAseq data in the developing brain, including our in-house atlas of the E10-P6 forebrain and brainstem
Language:R0 4 541
fungenomics/chromswitch
An R/Bioconductor package for detecting chromatin state switches
Language:R0 1 00
fungenomics/chromswitch-analysis
Code and data to accompany the chromswitch paper, "chromswitch: A flexible method for detecting chromatin state switches" (Jessa and Kleinman, Bioinformatics, 2018)
Language:R0 1 00
fungenomics/G34-gliomas
Cell-of-origin analysis for "Histone H3.3G34-mutant interneuron progenitors co-opt PDGFRA for gliomagenesis" (Chen*, Deshmukh*, Jessa*, Hadjadj*, et al, Cell, 2020)
Language:HTML0 3 00
fungenomics/Parameterized_report
Parameterized report and interactive plot introduction and demo
Language:HTML0 5 00
fungenomics/sandbox
A sandbox to test our workflow
Language:R0 6 190