furkankurtoglu

Grad. Student, Intelligent Systems Engineering @MathCancer Lab, Interested in Multiscale Systems Biology

Indiana UniversityBloomington, IN, USA

Pinned Repositories

08.01-phenotype-motility
Language:C++00
AMIGOS-hypoxia-Forked-
This is the Forked Project from AMIGOS-hypoxia.
Language:C++21
CRC-Organoids-Multiscale-Model
Language:C++21
CRC-Well
This is a repo for CRC-CAF communication model
Language:C++11
Cycle_Training
Language:C++00
PC_python_Fury
Language:Python2 2 01
PhysiCell-Intracellular-Models
This repo is created for the PhysiCell-Intracellular Paper. The four different approach and their models can be found in here.
Language:C++10
PhysiCell-SBML-trials
This repo is dedicated to for PhysiCell-SBML integration. (Be aware weird values around here!)
Language:Jupyter Notebook10
physicelldataloader
python3 physicell data output loader.
Language:Python10
whole-well
This repo is dedicated to the "whole-well" paper.
Language:C++01

furkankurtoglu's Repositories

furkankurtoglu/CRC-Organoids-Multiscale-Model
Language:C++21
furkankurtoglu/PC_python_Fury
Language:Python2 2 01
furkankurtoglu/CRC-Well
This is a repo for CRC-CAF communication model
Language:C++11
furkankurtoglu/PhysiCell-Intracellular-Models
This repo is created for the PhysiCell-Intracellular Paper. The four different approach and their models can be found in here.
Language:C++10
furkankurtoglu/PhysiCell-SBML-trials
This repo is dedicated to for PhysiCell-SBML integration. (Be aware weird values around here!)
Language:Jupyter Notebook10
furkankurtoglu/physicelldataloader
python3 physicell data output loader.
Language:Python10
furkankurtoglu/Cycle_Training
Language:C++00
furkankurtoglu/whole-well
This repo is dedicated to the "whole-well" paper.
Language:C++01
furkankurtoglu/Biofilm-Project
This is a class project in Multi-Cellular Systems Biology Course that aims to model two-species biofilm with agent-based modeling approach using PhysiCell.
Language:C++
furkankurtoglu/CRC-Knockouts
This repo is created for gene knockout simulations for Multiscale simulation of CRC spheroids.
furkankurtoglu/CRC-Organoid
Language:C++
furkankurtoglu/CRC_Archive
This repo is an archive for CRC-models. It includes old codes or versions of PhysiCell
Language:C++
furkankurtoglu/Cycle_Advancing_Example
Language:C++
furkankurtoglu/Death-Models-Training
Language:C++
furkankurtoglu/Death_Models_Training
Language:C++
furkankurtoglu/furkankurtoglu
Personal Bio
furkankurtoglu/intestinal_crypt
Language:Python
furkankurtoglu/Motility-Training-App
This is a PhysiCell repo for Motility Training App. It is for creating purposes and does not have xml2jupyter user interface
Language:C++
furkankurtoglu/Motility_Training_App
Language:C++1
furkankurtoglu/PhysiCell-Gurobi
This repo is created for FBA using Gurobi optimizer
Language:C++
furkankurtoglu/PhysiCell-Kinetic_ODEs
This repo contains PhysiCell-libroadrunner related models.
Language:C++
furkankurtoglu/PhysiCell-model-builder-FK
GUI application to build a PhysiCell model
Language:Python
furkankurtoglu/PhysiCell_FK
This is Furkan's copy of PhysiCell repo: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
Language:C++
furkankurtoglu/PhysiCell_intracellular_FK
Demo Intracellular (SBML) models (using libRoadrunner) in PhysiCell.
Language:Jupyter Notebook
furkankurtoglu/PhysiCell_Training_Materials
This repo is created to share Training Materials for PhysiCell.
furkankurtoglu/Sol_Ext
Language:C++1
furkankurtoglu/SparseLearning-GNN
Language:Python
furkankurtoglu/tr_mechanics
Language:C++1
furkankurtoglu/trsecretion
Language:C++
furkankurtoglu/Tumor_Image_Processing
This is initiallized project for my Image Processing Project. However, it will be used in Hypoxia project to find some important measerements for parameter estimation, i.e. viable rim size, necrotic area.
Language:Python