furkankurtoglu
Grad. Student, Intelligent Systems Engineering @MathCancer Lab, Interested in Multiscale Systems Biology
Indiana UniversityBloomington, IN, USA
Pinned Repositories
08.01-phenotype-motility
AMIGOS-hypoxia-Forked-
This is the Forked Project from AMIGOS-hypoxia.
CRC-Organoids-Multiscale-Model
CRC-Well
This is a repo for CRC-CAF communication model
Cycle_Training
PC_python_Fury
PhysiCell-Intracellular-Models
This repo is created for the PhysiCell-Intracellular Paper. The four different approach and their models can be found in here.
PhysiCell-SBML-trials
This repo is dedicated to for PhysiCell-SBML integration. (Be aware weird values around here!)
physicelldataloader
python3 physicell data output loader.
whole-well
This repo is dedicated to the "whole-well" paper.
furkankurtoglu's Repositories
furkankurtoglu/CRC-Organoids-Multiscale-Model
furkankurtoglu/PC_python_Fury
furkankurtoglu/CRC-Well
This is a repo for CRC-CAF communication model
furkankurtoglu/PhysiCell-Intracellular-Models
This repo is created for the PhysiCell-Intracellular Paper. The four different approach and their models can be found in here.
furkankurtoglu/PhysiCell-SBML-trials
This repo is dedicated to for PhysiCell-SBML integration. (Be aware weird values around here!)
furkankurtoglu/physicelldataloader
python3 physicell data output loader.
furkankurtoglu/Cycle_Training
furkankurtoglu/whole-well
This repo is dedicated to the "whole-well" paper.
furkankurtoglu/Biofilm-Project
This is a class project in Multi-Cellular Systems Biology Course that aims to model two-species biofilm with agent-based modeling approach using PhysiCell.
furkankurtoglu/CRC-Knockouts
This repo is created for gene knockout simulations for Multiscale simulation of CRC spheroids.
furkankurtoglu/CRC-Organoid
furkankurtoglu/CRC_Archive
This repo is an archive for CRC-models. It includes old codes or versions of PhysiCell
furkankurtoglu/Cycle_Advancing_Example
furkankurtoglu/Death-Models-Training
furkankurtoglu/Death_Models_Training
furkankurtoglu/furkankurtoglu
Personal Bio
furkankurtoglu/intestinal_crypt
furkankurtoglu/Motility-Training-App
This is a PhysiCell repo for Motility Training App. It is for creating purposes and does not have xml2jupyter user interface
furkankurtoglu/Motility_Training_App
furkankurtoglu/PhysiCell-Gurobi
This repo is created for FBA using Gurobi optimizer
furkankurtoglu/PhysiCell-Kinetic_ODEs
This repo contains PhysiCell-libroadrunner related models.
furkankurtoglu/PhysiCell-model-builder-FK
GUI application to build a PhysiCell model
furkankurtoglu/PhysiCell_FK
This is Furkan's copy of PhysiCell repo: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
furkankurtoglu/PhysiCell_intracellular_FK
Demo Intracellular (SBML) models (using libRoadrunner) in PhysiCell.
furkankurtoglu/PhysiCell_Training_Materials
This repo is created to share Training Materials for PhysiCell.
furkankurtoglu/Sol_Ext
furkankurtoglu/SparseLearning-GNN
furkankurtoglu/tr_mechanics
furkankurtoglu/trsecretion
furkankurtoglu/Tumor_Image_Processing
This is initiallized project for my Image Processing Project. However, it will be used in Hypoxia project to find some important measerements for parameter estimation, i.e. viable rim size, necrotic area.