Pinned Repositories
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
deacon_rockfish_RADseq
Commands and input files for population genetic analysis of Deacon Rockfish using RADseq. Used for: Vaux F, Rasmuson LK, Kautzi LA, Rankin PS, Blume MTO, Lawrence KA, Bohn S, O’Malley KG. (2019). Sex matters: otolith shape and genomic variation in deacon rockfish (Sebastes diaconus). Ecology and Evolution 9(23), 13153-13173.
general_bioinformatics
Some general scripts for bioinformatic file management
kaikoura_d_antarctica_GBS
Commands and input files for the phylogeographic analysis of southern bull kelp Durvillaea antarctica using genotyping-by-sequencing data.
metagenomics_summer_school
Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December
microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
north_island_d_poha_GBS
Commands and input files for the population genetic and phylogenetic analysis of southern bull kelp Durvillaea poha using GBS. Used for: Vaux F, Craw D, Fraser CI, Waters JM. (2021). Northward range extension for Durvillaea poha bull kelp: response to tectonic disturbance? Journal of Phycology 57(5), 1411-1418.
pacific_albacore_ddRADseq
Commands and input files for population genetic analysis of Pacific Albacore using ddRADseq. Used for: Vaux F, Bohn S, Hyde JR, O'Malley KGO. (2021). Adaptive markers distinguish North and South Pacific Albacore amid low population differentiation. Evolutionary Applications 14(5), 1343-1364.
PhD_morphometrics
R scripts for geometric morphometric analyses conducted on buccinoid true whelk shells (Aeneator, Antarctoneptunea, Kelletia, Penion) and tuatara dentary bones
turakirae_d_antarctica_GBS
Commands and input files for the phylogeographic analysis of southern bull kelp Durvillaea antarctica using genotyping-by-sequencing data. Used for: Vaux F, Craw D, Fraser CI, Waters JM. Parallel recolonisations generate distinct genomic sectors in kelp following high magnitude earthquake disturbance. Molecular Ecology (accepted)
fvaux's Repositories
fvaux/PhD_morphometrics
R scripts for geometric morphometric analyses conducted on buccinoid true whelk shells (Aeneator, Antarctoneptunea, Kelletia, Penion) and tuatara dentary bones
fvaux/academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
fvaux/deacon_rockfish_RADseq
Commands and input files for population genetic analysis of Deacon Rockfish using RADseq. Used for: Vaux F, Rasmuson LK, Kautzi LA, Rankin PS, Blume MTO, Lawrence KA, Bohn S, O’Malley KG. (2019). Sex matters: otolith shape and genomic variation in deacon rockfish (Sebastes diaconus). Ecology and Evolution 9(23), 13153-13173.
fvaux/general_bioinformatics
Some general scripts for bioinformatic file management
fvaux/kaikoura_d_antarctica_GBS
Commands and input files for the phylogeographic analysis of southern bull kelp Durvillaea antarctica using genotyping-by-sequencing data.
fvaux/metagenomics_summer_school
Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December
fvaux/microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
fvaux/north_island_d_poha_GBS
Commands and input files for the population genetic and phylogenetic analysis of southern bull kelp Durvillaea poha using GBS. Used for: Vaux F, Craw D, Fraser CI, Waters JM. (2021). Northward range extension for Durvillaea poha bull kelp: response to tectonic disturbance? Journal of Phycology 57(5), 1411-1418.
fvaux/pacific_albacore_ddRADseq
Commands and input files for population genetic analysis of Pacific Albacore using ddRADseq. Used for: Vaux F, Bohn S, Hyde JR, O'Malley KGO. (2021). Adaptive markers distinguish North and South Pacific Albacore amid low population differentiation. Evolutionary Applications 14(5), 1343-1364.
fvaux/turakirae_d_antarctica_GBS
Commands and input files for the phylogeographic analysis of southern bull kelp Durvillaea antarctica using genotyping-by-sequencing data. Used for: Vaux F, Craw D, Fraser CI, Waters JM. Parallel recolonisations generate distinct genomic sectors in kelp following high magnitude earthquake disturbance. Molecular Ecology (accepted)