Bioinformatics visualization tools with PyViz Panel and Bokeh. The objective is to have a set of plots and dashboards that can be re-used inside Jupyter notebooks as part of bioinformatic workflows or deployed as local web apps.
Current tools include:
- sequence alignment viewer
- genome feature viewer
- bam alignment viewer
pip install pybioviz
If using JupyterLab:
jupyter labextension install @bokeh/jupyter_bokeh
jupyter labextension install @pyviz/jupyterlab_pyviz