movetrack is an R package that provides simple functionality to estimate individual flight tracks from radio-telemetry data such as Motus using a hidden Markov model written in Stan.
You can install movetrack from the R Universe with
install.packages("movetrack", repos = c("https://g-rppl.r-universe.dev", getOption("repos")))To instead install the latest development version of the package from GitHub use
devtools::install_github("g-rppl/movetrack@dev")During the initial installation, make sure that the C++ toolchain required for CmdStan is set up properly. You can find more information here.
library(cmdstanr)
check_cmdstan_toolchain(fix = TRUE)If not, go to https://mc-stan.org/docs/cmdstan-guide/cmdstan-installation.html#cpp-toolchain and follow the instructions for your platform. Once your toolchain is configured correctly CmdStan can be installed:
install_cmdstan(cores = 2)This package provides two main functions: locate() and track(). The first function calculates location estimates based on antenna bearing and signal strength. The second function estimates individual flight paths based on the estimated locations using a hidden Markov model written in Stan.
You can find a quickstart example in the vignette movetrack_example.
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