gabraham/flashpca

Issues

• Errors when installing flashpca2

  #56 opened 2 years ago by Chg-Liu
  1

• Eigen/Core: No such file or directory

  #52 opened 3 years ago by josemq
  1

• FlashPCA with non-PLINK file

  #54 opened 3 years ago by burtoand
  0

• Error when running Project on plink files

  #53 opened 3 years ago by JMJOHNSON608
  0

• Can flashpcaR run with multiple cores?

  #51 opened 3 years ago by mmoisse
  0

• problem in 'make'

  #50 opened 4 years ago by biopolyhedron
  2

• Potential small bug in RandomPCA::project

  #49 opened 4 years ago by kachulis
  0

• Output (PCs, eigenvectors, loadings) should have dimension names if available

  #46 opened 4 years ago by gabraham
  1

• error: no matching function for call to ‘RandomPCA::scca

  #47 opened 4 years ago by preetilk
  1

• flashpcaR vignettes need to be updated

  #45 opened 5 years ago by gabraham
  0

• Testing against newest version of Spectra

  #24 opened 5 years ago by yixuan
  0

• Help installing flashpcaR

  #31 opened 5 years ago by sharvari14
  1

• R CMD build flashpcaR fails

  #33 opened 5 years ago by Smooge123
  2

• flashpcaR not compiling with RSpectra 0.14-0 (temporary fix included)

  #37 opened 5 years ago by mcanouil
  4

• flashpcaR should return PVE

  #35 opened 5 years ago by gabraham
  5

• scca canonical vectors depend on scale

  #43 opened 5 years ago by gabraham
  0

• If the number of dimensions (ndim) selected is too big, flashpca fails

  #42 opened 5 years ago by rcanovas
  0

• maf file format, when is given as paremeter, does not follows the plink .frq format

  #41 opened 5 years ago by rcanovas
  0

• Bug in flashpca.cpp (Y_meansd is wrongly assigned)

  #40 opened 5 years ago by rcanovas
  0

• build failing

  #39 opened 5 years ago by drwhitehouse
  5

• flashpcaR install error

  #36 opened 5 years ago
  1

• Error when installing flashpca

  #38 opened 5 years ago by jkimsis
  4

• Support for parallelism?

  #32 opened 7 years ago by privefl
  1

• No output from --check unless using --verbose is confusing

  #29 opened 7 years ago by gabraham
  0

• Can flashpca take a covariance matrix like the eigen in R does?

  #28 opened 7 years ago by SiyangLiu
  1

• Confusing `center` stot in `flashpca`.

  #26 opened 7 years ago by privefl
  0

• Crash if PLINK data is missing

  #25 opened 8 years ago by gabraham
  1

• R compilation error on Windows

  #23 opened 8 years ago by evoclue
  1

• flashpcaR should determine block_size from max memory

  #22 opened 8 years ago by gabraham
  0

• Inconsistent scaling for principal components

  #16 opened 8 years ago by gabraham
  2

• Feature request: projection PCA

  #15 opened 8 years ago by mp15
  4

• Inconsistent argument names

  #20 opened 8 years ago by gabraham
  0

• Add different SNP standardisation "binom2"

  #18 opened 8 years ago by gabraham
  0

• Low memory PCA should be the default

  #12 opened 8 years ago by gabraham
  1

• predict.cpp should be able to accept external means and stdevs

  #17 opened 8 years ago by gabraham
  1

• Linux static-linked version may not work on all x86-64 systems

  #19 opened 8 years ago by gabraham
  1

• exclusion_regions.txt should be named by the ref it connects to

  #14 opened 9 years ago by mp15
  2

• scca may produce negative canonical correlations

  #13 opened 9 years ago by gabraham
  0

• flashpcaR should return center and scale like prcomp

  #6 opened 9 years ago by gabraham
  7

• flashpca v1.2.5 statically linked crashes on Linux

  #11 opened 9 years ago by gabraham
  1

• Compiling failed with g++ 4.8

  #10 opened 9 years ago by pwwang
  2

• On mac, clang/llvm doesn't support fopenmp

  #5 opened 9 years ago by gabraham
  1

• flashpcaR won't install on Windows due to breakage of symlinks

  #4 opened 9 years ago by gabraham
  2

• Use roxygen2 for comments

  #7 opened 9 years ago by gabraham
  1

• incorrect reading of .bed file

  #9 opened 9 years ago by MikeDMorgan
  10

• standardise "none" doesn't work

  #2 opened 10 years ago by gabraham
  0

• transposing data produces results inconsisent with non-transposed data

  #3 opened 10 years ago by gabraham
  0

• Better accuracy by orthogonalisation during power iterations

  #1 opened 10 years ago by gabraham
  1