Conversion of PacBio BAM files into gzipped fasta and fastq files, including splitting of barcoded data
Latest version can be installed via bioconda package bam2fastx.
Please refer to our official pbbioconda page for information on Installation, Support, License, Copyright, and Disclaimer.
Both tools have an identical interface and take BAM and/or DataSet files as input. Examples:
bam2fasta -o projectName m54008_160330_053509.subreads.bam
bam2fastq -o myEcoliRuns m54008_160330_053509.subreads.bam m54008_160331_235636.subreads.bam
bam2fasta -o myHumanGenome m54012_160401_000001.subreadset.xml
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