/SARS-CoV-2

Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

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Global platform for the analysis of SARS-CoV-2 data: Genomics, Cheminformatics, and Proteomics
Using open source tools and public cyberinfrastructure for transparent, reproducible analyses of viral datasets.

Visit our new SARS-CoV-2 surveillance site!

As of January 2022 this site will no longer be updated. Please visit our new site at https://galaxyproject.org/projects/covid19/ for the latest information on our surveillance efforts!

The goal of this resource is to provide publicly accessible infrastructure and workflows for SARS-CoV-2 data analyses. We currently feature three different types of analyses: Genomics, Cheminformatics, and Proteomics.

The analyses have been performed using the Galaxy platform and open source tools from BioConda. Tools were run using XSEDE resources maintained by the Texas Advanced Computing Center (TACC), Pittsburgh Supercomputing Center (PSC), and Indiana University in the U.S., de.NBI, VSC cloud resources and IFB cluster resources on the European side, STFC-IRIS at the Diamond Light Source, and ARDC cloud resources in Australia.

Galaxy Project   European Galaxy Project   Australian Galaxy Project   bioconda   XSEDE   TACC   de.NBI   ELIXIR   PSC   Indiana University   Galaxy Training Network   Bio Platforms Australia   Australian Research Data Commons   VIB   ELIXIR Belgium   Vlaams Supercomputer Center   EOSC-Life   Datamonkey   IFB   GalaxyP   NIAID   NHGRI