Fix dependencies for liftOver1
Closed this issue · 1 comments
jennaj commented
Workaround for end-users
Avoid the tool
- Convert genome coordinates between assemblies and genomes
Use a replacement tool
- CrossMap BED Convert genome coordinates or annotation files between genome assemblies
- CrossMap BAM
- CrossMap VCF
- CrossMap Wig
- CrossMap GFF
Issue details
tool_id=liftOver1
/../tool_script.sh: line 22: python: command not found
jennaj commented
Closing out since we won't support the older tool. Added in workaround for anyone that was tracking.