galaxyproject/usegalaxy-tools

Issues

• Request: install ruvseq at UseGalaxy.org.AU

  #869 opened 3 months ago by jennaj
  0

• Correct tool_id interactive_tool_phyloseq

  #868 opened 3 months ago by jennaj
  0

• Install phyloseq_from_dada2 1.46.0+galaxy0 at ORG

  #829 opened 3 months ago by jennaj
  1

• Tool panel: remove velvet tools instead of marking as deprecated

  #865 opened 3 months ago by jennaj
  1

• Enhancement: allocate more memory for bbtools_bbduk 39.06+galaxy2 at ORG

  #750 opened 3 months ago by jennaj
  1

• Request: increase memory allocation for repeatmasker_wrapper

  #839 opened 4 months ago by fubar2
  13

• Request: Increase memory allocation for bakta 1.9.4+galaxy0 at ORG

  #853 opened 3 months ago by jennaj
  2

• Add humann nucleotide and protein database for GTA training

  #855 opened 3 months ago by paulzierep
  3

• Request: increase memory allocation for microsatbed

  #831 opened 4 months ago by jennaj
  12

• Request: increase memory allocation for miniprot

  #832 opened 4 months ago by jennaj
  4

• Request: increase memory allocation for mashmap

  #833 opened 4 months ago by jennaj
  4

• Request: increase memory allocation for bigwig_outlier_bed

  #838 opened 4 months ago by fubar2
  1

• Install new tools at ORG for RNA Analysis

  #852 opened 4 months ago by jennaj
  0

• Request: Increase memory allocation for snippy 4.6.0+galaxy0

  #850 opened 4 months ago by jennaj
  1

• Configuration issue with SortMeRNA at org?

  #849 opened 4 months ago by jennaj
  0

• Updated version of Kraken2 fails at jetstream2

  #847 opened 4 months ago by jennaj
  1

• Request: Install get_organelle_from_reads 1.7.7.1+galaxy0 (and reference data) at ORG

  #848 opened 4 months ago by jennaj
  0

• Tool search: If we could display the CrossMap tools when someone searches with "liftover" that would be fantastic!

  #843 opened 4 months ago by jennaj
  0

• Bug: sub-commands in Stringtie jobs result in no ouput -- only at ORG

  #840 opened 4 months ago by jennaj
  0

• Request: increase memory allocation for bcftools_view

  #830 opened 4 months ago by jennaj
  0

• Request: increase memory for hicexplorer tools

  #828 opened 4 months ago by jennaj
  0

• Increase memory allocation for pretext_map

  #825 opened 4 months ago by jennaj
  1

• Hide hifive in the tool panel at ORG

  #824 opened 4 months ago by jennaj
  0

• Memory request: macs2_bdgcmp at usegalaxy.org

  #816 opened 5 months ago by jennaj
  0

• Enhancement: Increase memory allocation to 18 GB for picard_MarkDuplicates3.1.1.0 at ORG

  #719 opened 9 months ago by jennaj
  2

• Increase memory allocation for star_fusion

  #785 opened 6 months ago by jennaj
  0

• Increase memory allocation for CONVERTER_gff_to_interval_index_0

  #783 opened 6 months ago by jennaj
  0

• Install more krakentools tools at ORG to support tutorials and synch up servers

  #778 opened 6 months ago by jennaj
  1

• Fails when creating optional tar output: openduck_run_smd 0.1.1

  #779 opened 6 months ago by jennaj
  0

• Increase memory allocation for rbc_mirdeep2_quantifier

  #751 opened 8 months ago by jennaj
  0

• Install humann_join_tables/3.8+galaxy0 at ORG

  #713 opened 9 months ago by jennaj
  0

• Enhancement: Improve runtime repeatmodeler/2.0.5+galaxy0

  #714 opened 9 months ago by jennaj
  1

• Increase memory allocation for snippy_core 4.6.0+galaxy0

  #723 opened 8 months ago by jennaj
  1

• Consider more working memory for snippy_core 4.6.0+galaxy0

  #716 opened 9 months ago by jennaj
  0

• Correct configuration for anndata_import 0.10.3+galaxy0

  #749 opened 8 months ago by jennaj
  2

• Tool install request circexplorer2 2.3.8+galaxy0

  #737 opened 8 months ago by jennaj
  1

• Fix configuration problem with rbc_mafft 7.520+galaxy0

  #717 opened 8 months ago by jennaj
  1

• Configuration issue minimap2 2.28+galaxy0 at ORG

  #720 opened 8 months ago by jennaj
  1

• Enhancement: Increase allocated memory for bg_sortmerna

  #742 opened 8 months ago by jennaj
  0

• Increase memory allocation for mummer_show_coords at ORG

  #747 opened 8 months ago by jennaj
  0

• Snpeff build galaxy6 failures at Jetstream2 ORG

  #731 opened 8 months ago by jennaj
  3

• Install freyja_variants at ORG

  #748 opened 8 months ago by jennaj
  0

• Configuration bug fasterq_dump 3.0.10+galaxy0 at ORG

  #718 opened 8 months ago by jennaj
  1

• Repair Classify.seqs at ORG

  #739 opened 8 months ago by jennaj
  1

• deps of this repo are incompatible with python 3.12

  #744 opened 8 months ago by martenson
  1

• Increase memory allocation for picard_MarkDuplicates

  #740 opened 8 months ago by jennaj
  1

• Repair Cluster.split at ORG

  #738 opened 8 months ago by jennaj
  0

• Error with structure fold

  #708 opened 10 months ago by jennaj
  0

• Quast configuration problem at ORG

  #705 opened 10 months ago by jennaj
  1

• Config problem abims_xcms_retcor 3.12.0+galaxy0

  #702 opened 10 months ago by jennaj
  0