galaxyproject/usegalaxy-tools

Issues

• Increase memory allocation for star_fusion

  #785 opened 2 months ago by jennaj
  0

• Increase memory allocation for CONVERTER_gff_to_interval_index_0

  #783 opened 2 months ago by jennaj
  0

• Install more krakentools tools at ORG to support tutorials and synch up servers

  #778 opened 2 months ago by jennaj
  1

• Fails when creating optional tar output: openduck_run_smd 0.1.1

  #779 opened 2 months ago by jennaj
  0

• Kraken2 reference database issue

  #672 opened 8 months ago by jennaj
  1

• Increase memory allocation for rbc_mirdeep2_quantifier

  #751 opened 4 months ago by jennaj
  0

• Fixup 2bit indexes for Translate BED transcripts

  #647 opened 4 months ago by jennaj
  2

• Fix dependencies for liftOver1

  #663 opened 4 months ago by jennaj
  1

• Reconnect indexes for metaphlan at org

  #649 opened 4 months ago by jennaj
  4

• Add Funannotate indexes at ORG

  #657 opened 4 months ago by jennaj
  1

• Fix connection to NCBI for get_species_taxids at ORG

  #653 opened 4 months ago by jennaj
  1

• Install humann_join_tables/3.8+galaxy0 at ORG

  #713 opened 5 months ago by jennaj
  0

• Enhancement: Improve runtime repeatmodeler/2.0.5+galaxy0

  #714 opened 5 months ago by jennaj
  1

• Increase memory allocation for snippy_core 4.6.0+galaxy0

  #723 opened 4 months ago by jennaj
  1

• Consider more working memory for snippy_core 4.6.0+galaxy0

  #716 opened 5 months ago by jennaj
  0

• Correct configuration for anndata_import 0.10.3+galaxy0

  #749 opened 4 months ago by jennaj
  2

• Tool install request circexplorer2 2.3.8+galaxy0

  #737 opened 4 months ago by jennaj
  1

• Fix configuration problem with rbc_mafft 7.520+galaxy0

  #717 opened 4 months ago by jennaj
  1

• Enhancement: Increase memory allocation to 18 GB for picard_MarkDuplicates3.1.1.0 at ORG

  #719 opened 5 months ago by jennaj
  1

• Configuration issue minimap2 2.28+galaxy0 at ORG

  #720 opened 4 months ago by jennaj
  1

• Enhancement: Increase allocated memory for bg_sortmerna

  #742 opened 4 months ago by jennaj
  0

• Increase memory allocation for mummer_show_coords at ORG

  #747 opened 4 months ago by jennaj
  0

• Enhancement: allocate more memory for bbtools_bbduk 39.06+galaxy2 at ORG

  #750 opened 4 months ago by jennaj
  0

• Snpeff build galaxy6 failures at Jetstream2 ORG

  #731 opened 4 months ago by jennaj
  3

• Install freyja_variants at ORG

  #748 opened 4 months ago by jennaj
  0

• Configuration bug fasterq_dump 3.0.10+galaxy0 at ORG

  #718 opened 4 months ago by jennaj
  1

• Repair Classify.seqs at ORG

  #739 opened 4 months ago by jennaj
  1

• deps of this repo are incompatible with python 3.12

  #744 opened 4 months ago by martenson
  1

• Increase memory allocation for picard_MarkDuplicates

  #740 opened 4 months ago by jennaj
  1

• Repair Cluster.split at ORG

  #738 opened 4 months ago by jennaj
  0

• Circos: configuration problem at ORG

  #699 opened 6 months ago by jennaj
  1

• Error with structure fold

  #708 opened 6 months ago by jennaj
  0

• Quast configuration problem at ORG

  #705 opened 6 months ago by jennaj
  1

• Install toolshed.g2.bx.psu.edu/repos/iuc/rnaquast/rna_quast/2.2.3+galaxy0

  #685 opened 6 months ago by jennaj
  0

• Install metabat2_jgi_summarize_bam_contig_depths 2.15+galaxy3

  #691 opened 6 months ago by jennaj
  0

• Config problem abims_xcms_retcor 3.12.0+galaxy0

  #702 opened 6 months ago by jennaj
  0

• Rstudio fails to launch at ORG

  #681 opened 7 months ago by jennaj
  1

• Fix biocontainer for Seqtk tool group

  #680 opened 7 months ago by jennaj
  4

• No user data available in Jupyter at ORG

  #670 opened 7 months ago by jennaj
  1

• Jupyter notebook doesn't launch at ORG

  #671 opened 7 months ago by jennaj
  1

• Configuration problem with metabat2 2.15+galaxy3

  #693 opened 7 months ago by jennaj
  0

• Correct index configuration for humann tool

  #669 opened 9 months ago by jennaj
  0

• Add in native index for Mitos2

  #668 opened 9 months ago by jennaj
  1

• Fix configuration for Proteomics tutorial

  #667 opened 9 months ago by jennaj
  0

• Fix dependencies for chembl 0.10.1+galaxy4

  #666 opened 9 months ago by jennaj
  0

• Link to UCSC for dm6 is disconnected at UseGalaxy.eu

  #648 opened 10 months ago by jennaj
  4

• Mark Trackster as deprecated in the UI

  #658 opened 10 months ago by jennaj
  1

• Add more bisulfite MethylDackel indexes at ORG

  #646 opened 10 months ago by jennaj
  0

• Fix quast dependencies at ORG/Jetstream

  #644 opened a year ago by jennaj
  1

• Subdomain tool pushing across instances

  #642 opened a year ago by nomadscientist
  1