paulzierep

Pinned Repositories

galaxy_tool_metadata_extractor
Galaxy Communities Dock aka Galaxy Codex: catalog of Galaxy resources (tools, training, workflows)
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bachelor-thesis
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beer_microbiome
Repo for my master thesis on beer microbiome
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BiG-SCAPE
Similarity networks of biosynthetic gene clusters
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BiG-SCAPE_Galaxy
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bioconda-recipes
Conda recipes for the bioconda channel.
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DeepMicro
Deep representation learning for disease prediction based on microbiome data
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galaxy-hub
Galaxy Community Hub
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tagespaul_2.0
Raspberry Pi based color Tagespaul 2.0
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usegalaxy-eu-tools
List of tools included in https://usegalaxy.eu
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paulzierep's Repositories

paulzierep/bachelor-thesis
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paulzierep/beer_microbiome
Repo for my master thesis on beer microbiome
Language:Jupyter Notebook00
paulzierep/BiG-SCAPE
Similarity networks of biosynthetic gene clusters
Language:JavaScript00
paulzierep/BiG-SCAPE_Galaxy
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paulzierep/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0 00
paulzierep/DeepMicro
Deep representation learning for disease prediction based on microbiome data
Language:Python0 0 10
paulzierep/earlham-galaxytools
Galaxy tools and workflows developed at the Earlham Institute
Language:Python0 0 00
paulzierep/galaxy-hub
Galaxy Community Hub
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paulzierep/tagespaul_2.0
Raspberry Pi based color Tagespaul 2.0
Language:Python0 1 00
paulzierep/docker-phyloseq
Dockerized deployment of the shiny-phyloseq app
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paulzierep/galaxy
Data intensive science for everyone.
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paulzierep/Galaxy-Tool-Metadata-Extractor-Test-Wrapper
This repository contains a set of wrappers that can be used to test the Galaxy Tool Metadata Extractor workflow
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paulzierep/galaxy_tool_extractor
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paulzierep/galaxy_tools
Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML
paulzierep/galaxytools
:microscope::books: Galaxy Tool wrappers
paulzierep/infrastructure-playbook
Ansible playbook for managing UseGalaxy.eu infrastructure.
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paulzierep/MAPseq
highthroughput rRNA sequence classification and OTU mapping for metagenomic samples
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paulzierep/MGnify_BProjekt
For my Bachelor's project, I am undertaking the task of porting, enhancing, and benchmarking a read-based MGnify analysis pipeline designed for microbiome data analysis, utilizing the Galaxy framework.
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paulzierep/mOTUs
a tool for marker gene-based OTU (mOTU) profiling
paulzierep/multi-package-containers
Testing building mulled containers for multi-requirement tools.
paulzierep/multi_modality_prediction
paulzierep/pico_galaxy
Galaxy tools and wrappers for sequence analysis
paulzierep/research-software-ecosystem.github.io
Research Software Ecosystem
paulzierep/RSEc-content
A metadata commons to store research software metadata
paulzierep/shiny-phyloseq
An interactive web application for demonstrating and using phyloseq.
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paulzierep/tools-ecology
Galaxy Tools maintained and developed by the GalaxyE community
paulzierep/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
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paulzierep/training-material
A collection of Galaxy-related training material
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paulzierep/usegalaxy-eu-tools
List of tools included in https://usegalaxy.eu
Language:Python
paulzierep/website
UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)