Gale Lab at the University of Washington
We study innate immunity to virus infection, intracellular immune processes, host response to viral infection, tuberculosis vaccine development and more.
Seattle, WA
Pinned Repositories
scPathoQuant
single cell pathogen alignment and quantification tool
Whitmore_scPathoQuant_testSets
Analysis for scPathoQuant software
Estes_GeoMx_DSP
PublishedCode
Links to code for recent publications
Malouli_Signature_of_ddCyCMV-SIV_protection
Details the analysis procedure fo identifying transcriptomic signature of ddCyCMV-SIV protection
GaleGEAnalysis
SCWrapper
Olson_Latent_HIV_Infection
This repository holds codes for bioinformatic analysis in paper Latent HIV infection disrupts cell-intrinsic innate immunity
Paiardini_Modulation_type_I_Interferon
Tisoncik-Go_ZIKA_NHP_Geomx_FetalBrain
Contains analysis code for the Geomx spatial analysis of NHP fetal brains infected with zika
Gale Lab at the University of Washington's Repositories
galelab/scViz
Package of single cell visualization methods
galelab/scPathoQuant
single cell pathogen alignment and quantification tool
galelab/Sacha_CyCMV-FLU_2024
Bulk RNA sequencing analysis for Cynomolgus macaques given CyCMV/flu vectors
galelab/Paiardini_Modulation_type_I_Interferon
galelab/Malouli_Signature_of_ddCyCMV-SIV_protection
Details the analysis procedure fo identifying transcriptomic signature of ddCyCMV-SIV protection
galelab/Tisoncik-Go_ZIKA_NHP_BulkRNAseq_FetalBrain
galelab/Tisoncik-Go_ZIKA_NHP_Geomx_FetalBrain
Contains analysis code for the Geomx spatial analysis of NHP fetal brains infected with zika
galelab/Whitmore_scPathoQuant_testSets
Analysis for scPathoQuant software
galelab/Olson_Latent_HIV_Infection
This repository holds codes for bioinformatic analysis in paper Latent HIV infection disrupts cell-intrinsic innate immunity
galelab/Estes_GeoMx_DSP
galelab/ExprAnalysisPipeline
galelab/GaleGEAnalysis
galelab/SCWrapper
galelab/PublishedCode
Links to code for recent publications