gallantk72

gallantk72's Stars

• nf-core/scdownstream

  A single cell transcriptomics pipeline for QC, integration and making the data presentable

  Language:Nextflow4412

• nf-core/variantbenchmarking

  A nextflow variant benchmarking pipeline - premature

  Language:Nextflow137

• nf-core/differentialabundance

  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

  Language:Nextflow6537

• nf-core/modules

  Repository to host tool-specific module files for the Nextflow DSL2 community!

  Language:Nextflow286727

• nf-core/eager

  A fully reproducible and state-of-the-art ancient DNA analysis pipeline

  Language:Nextflow14982

• DendrouLab/panpipes

  Multi-modal single cell analysis pipelines

  Language:Python569

• plotly/dash

  Data Apps & Dashboards for Python. No JavaScript Required.

  Language:Python21.6k2.1k

• fastai/fastbook

  The fastai book, published as Jupyter Notebooks

  Language:Jupyter Notebook22.1k8.5k

• d2l-ai/d2l-en

  Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

  Language:Python24.1k4.4k

• CamDavidsonPilon/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers

  aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

  Language:Jupyter Notebook26.9k7.9k

• donnemartin/data-science-ipython-notebooks

  Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

  Language:Python27.6k7.9k

• streamlit/streamlit

  Streamlit — A faster way to build and share data apps.

  Language:Python36k3.1k

• pandas-dev/pandas

  Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

  Language:Python43.9k18k

• PrefectHQ/prefect

  Prefect is a workflow orchestration framework for building resilient data pipelines in Python.

  Language:Python17.7k1.7k

• hadley/adv-r

  Advanced R: a book

  Language:TeX2.4k1.7k

• hadley/r-in-production

  Language:SCSS609

• calico/baskerville

  Machine learning methods for DNA sequence analysis.

  Language:Python339

• apache/superset

  Apache Superset is a Data Visualization and Data Exploration Platform

  Language:TypeScript63.1k14k

• amphi-ai/amphi-etl

  Visual Data Transformation with Python Code Generation. Low-Code Python-based ETL.

  Language:TypeScript92344

• dnanexus-rnd/GLnexus

  Scalable gVCF merging and joint variant calling for population sequencing projects

  Language:C++15438

• insitro/redun

  Yet another redundant workflow engine

  Language:Python53045

• ResidentMario/py_d3

  D3 block magic for Jupyter notebook.

  Language:Python45238

• SBU-BMI/wsinfer

  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images

  Language:Python6011

• AdmiralenOla/Scoary

  Pan-genome wide association studies

  Language:Python15434

• stephenslab/susieR

  R package for "sum of single effects" regression.

  Language:R18748

• BGI-shenzhen/LDBlockShow

  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

  Language:Perl14341

• jupyterhub/binderhub

  Run your code in the cloud, with technology so advanced, it feels like magic!

  Language:Python2.6k390

• the-turing-way/the-turing-way

  Host repository for The Turing Way: a how to guide for reproducible data science

  Language:TeX1.9k659

• OpenRefine/OpenRefine

  OpenRefine is a free, open source power tool for working with messy data and improving it

  Language:Java10.9k2k

• natir/vcf2parquet

  Convert vcf in parquet

  Language:Rust232