gandalab
This is Ganda Lab Group's Github page You will find here the data and code for all projects performed in our lab.
Pinned Repositories
amr-heavymetal
Description pending
AnimalMicrobiomes
Repo for Animal Microbiomes Class
bifido-meta-analysis
biomehorizon
Plot microbiome time series in parallel
bird-dna-extraction
Repository for data and code of our manuscript comparing DNA extraction methods suitable for cloacal swabs
brazil-microbiome-workshop-2024
Repo to contain all relevant information for the microbiome workshop
general-info
Kenya-AMR
amr++ analysis of shotgun fecal samples from Kenya dairy farms
milk-anomaly-detection
Protocols
Protocols used in the Ganda Laboratory
gandalab's Repositories
gandalab/Protocols
Protocols used in the Ganda Laboratory
gandalab/milk-anomaly-detection
gandalab/bird-dna-extraction
Repository for data and code of our manuscript comparing DNA extraction methods suitable for cloacal swabs
gandalab/Kenya-AMR
amr++ analysis of shotgun fecal samples from Kenya dairy farms
gandalab/amr-heavymetal
Description pending
gandalab/bifido-meta-analysis
gandalab/biomehorizon
Plot microbiome time series in parallel
gandalab/brazil-microbiome-workshop-2024
Repo to contain all relevant information for the microbiome workshop
gandalab/broiler-breeder-metformin
Repo for VanSyoc 2022
gandalab/general-info
gandalab/pet-salmonella
Repo to track work done in collaboration with PA department of health
gandalab/Capsicum
gandalab/FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
gandalab/gandalab.github.io
Ganda Lab Website
gandalab/General
gandalab/ggpubr
'ggplot2' Based Publication Ready Plots
gandalab/KickStart-Workshop-2020
Materials for the Fall 2020 KickStart Workshop
gandalab/KickStart-Workshop-2023
Materials for the 2023 PSU One Health Microbiome Center KickStart Workshop, August 9 - 11
gandalab/metformin-mycobiome
Repo for data and analysis of VanSyoc et al.
gandalab/microshades
This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions for applying these colors to microbiome data.
gandalab/microViz
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
gandalab/mouse-metf-prob
gandalab/OHMC_Colaboratory
Protocols and templates for OHMC colaboratory
gandalab/Online_R_learning
Online R learning for applied statistics
gandalab/PA-Dairy-AMR-Sociology
gandalab/Pig-Microbiology
A comparative study of the bacterial diversity and composition of nursery piglet's oral fluid, feces and housing environment
gandalab/PoultryMicrobiome
Microbiome and Performance analysis
gandalab/qiime2
Official repository for the QIIME 2 framework.
gandalab/qiime2R
Import qiime2 artifacts to R
gandalab/UK-microbiome-workshop-2024
Repo to contain all relevant information for the microbiome workshop