Gandal Lab

ASD_STG_LCM_RNAseq

RNA-seq of laser captured neuron and oligos in ASD superior temporal gyrus

BrainSpan-trajectory

Code that downloads, munges, and plots developmental gene expression data from BrainSpan

C4A-network

Code accompanying the manuscript "Brain gene co-expression networks link complement signaling with convergent synaptic pathology in schizophrenia"

Dev_Brain_IsoSeq

Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain

devBrain_xQTL

GENCODE-EDA

Exploratory data analysis for GENCODE annotation in Julia or R

gene-list

📚List of curated gene sets for enrichment analyses

h2-snakemake-experimental

Snakemake profile for Hoffman2

NHP_MIA_RNAseq

Code and documentation for NHP_MIA_RNAseq project

wf-single-cell

Oxford Nanopore's single cell pipeline (successor to Sockeye) with enhancements for our cluster

gandallab/devBrain_xQTL

gandallab/Dev_Brain_IsoSeq

Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain

gandallab/ASD_STG_LCM_RNAseq

RNA-seq of laser captured neuron and oligos in ASD superior temporal gyrus

gandallab/BrainSpan-trajectory

Code that downloads, munges, and plots developmental gene expression data from BrainSpan

gandallab/C4A-network

Code accompanying the manuscript "Brain gene co-expression networks link complement signaling with convergent synaptic pathology in schizophrenia"

gandallab/NHP_MIA_RNAseq

Code and documentation for NHP_MIA_RNAseq project

gandallab/GENCODE-EDA

Exploratory data analysis for GENCODE annotation in Julia or R

gandallab/gene-list

📚List of curated gene sets for enrichment analyses

gandallab/h2-snakemake-experimental

Snakemake profile for Hoffman2

gandallab/ipsych_xdx_finemap

gandallab/wf-single-cell

Oxford Nanopore's single cell pipeline (successor to Sockeye) with enhancements for our cluster

gandallab/brain_CTP_deconv

Deconvolving brain cell-types from DNA methylation data