ganslate-team/ganslate

Issues

• Add more functionality tests:

  #108 opened 3 years ago by surajpaib
  1

• Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?

  #107 opened 3 years ago by surajpaib
  1

• Switch to monai's `decollate_batch`

  #102 opened 3 years ago by ibro45
  0

• Volumetric probability map based PatchSampler

  #89 opened 3 years ago by surajpaib
  5

• Windowed images not displayed correctly in tensorboard

  #100 opened 3 years ago by ibro45
  0

• Restructure docs to separate package overview from tutorials

  #99 opened 3 years ago by cnmy-ro
  0

• make default imagedataset have different behavior for train vs val/test modes

  #69 opened 3 years ago by ibro45
  4

• CLI tab autocompletion not working

  #98 opened 3 years ago by ibro45
  0

• Document + support framework for fine-tuning on a different dataset

  #87 opened 3 years ago by surajpaib
  2

• Center crop xy in StochasticFocalPatchSampler

  #22 opened 3 years ago by ibro45
  0

• Weights and Biases throws login error

  #33 opened 3 years ago by surajpaib
  2

• Go through TODOs in the code

  #46 opened 3 years ago by ibro45
  0

• separate out medical utils

  #97 opened 3 years ago by ibro45
  0

• Enforce only image_size or patch_size

  #47 opened 3 years ago by ibro45
  0

• base dataset classes

  #60 opened 3 years ago by ibro45
  0

• Add structure-constrained GANs to the list of available GANs

  #96 opened 3 years ago by surajpaib
  0

• Make CycleGAN's separate channel config cleaner and more readable

  #86 opened 3 years ago by cnmy-ro
  0

• Out channels missing in PatchGAN 3D

  #88 opened 3 years ago by surajpaib
  1

• Better logging names for losses, metric, G and D, and visuals

  #72 opened 3 years ago by ibro45
  0

• metrics all over the place in GAN implementations

  #73 opened 3 years ago by ibro45
  1

• Wandb, tensorboard for Inferer and Evaluators that work with DDP

  #53 opened 3 years ago by ibro45
  0

• Add warning for when dataset size is smaller than number of processes in DDP * batch size

  #76 opened 3 years ago by surajpaib
  1

• Figure out logging for multimodal images

  #79 opened 3 years ago by cnmy-ro
  0

• PatchGAN output channels set equal to in_channels? Change it to 1

  #77 opened 3 years ago by cnmy-ro
  10

• Val-Test metrics need to work accurately across batches and across data points

  #74 opened 3 years ago by surajpaib
  4

• metrics calculation not working for batch_size > 1

  #70 opened 3 years ago by ibro45
  0

• multi_dataset breaks interpolation

  #68 opened 3 years ago by ibro45
  0

• Discuss and Analyze all Evaluation Metrics

  #45 opened 3 years ago by surajpaib
  0

• Finalize Experiment Parameters

  #48 opened 3 years ago by surajpaib
  0

• Fix patch sizes for all 3D experiments

  #49 opened 3 years ago by surajpaib
  0

• inplace activations and memcnn

  #19 opened 3 years ago by ibro45
  1

• skip first n iters in val

  #61 opened 3 years ago by ibro45
  3

• report time needed per iter and total for val and test

  #62 opened 3 years ago by ibro45
  0

• Decide if metrics should be masked with patient body.

  #57 opened 3 years ago by surajpaib
  3

• Replace SSIM with a better version

  #54 opened 3 years ago by surajpaib
  1

• empty out __init__.py's

  #51 opened 3 years ago by ibro45
  0

• Brainstorm about flags in the EvalConfig

  #38 opened 3 years ago by surajpaib
  0

• Implement Multi-scale Discriminator Architecture

  #29 opened 3 years ago by surajpaib
  0

• Loss masking for certain values such as out of bounds

  #31 opened 3 years ago by surajpaib
  0

• Fix and test bounding + masking implementations

  #37 opened 3 years ago by surajpaib
  1

• Test

  #39 opened 4 years ago by surajpaib
  0

• No permissions to push into origin branch

  #36 opened 4 years ago by ZhixiangWang-CN
  1

• CT patient bed and clothing removal

  #26 opened 4 years ago by surajpaib
  1

• Simplified Inference Architecture

  #30 opened 4 years ago by surajpaib
  1

• computation and dataloading time is calculated well, but might not be obvious that it is when log_freq is a low value

  #28 opened 4 years ago by ibro45
  0

• Novograd optimizer

  #27 opened 4 years ago by ibro45
  0

• Add methods to ignore terminal slices in the CBCT FOV

  #23 opened 4 years ago by surajpaib
  1

• gan_summary breaks training with num_workers>0 for 3D training

  #21 opened 4 years ago by ibro45
  0

• implement function for setting seeds for reproducibility

  #17 opened 4 years ago by ibro45
  0

• save checkpoint at the end

  #18 opened 4 years ago by ibro45
  0