Pinned Repositories
BioTools
Genes variants annotation tools using online services. Also does basic manipulations of HPO.
eKLIPse
a tool for predicting mitochondrial DNA deletions using soft-clipping
gatk
Official code repository for GATK versions 4 and up
learning_vcf_file
Learning the Variant Call Format
LongRead_tutorials
Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
MPhil-Genomic-Medicine
Scripts for MPhil research project (Exploring Cancer Predisposition in the 100,000 Genomes Project dataset)
MToolBox
A bioinformatics pipeline to analyze mtDNA from NGS data
NGS_RNA
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
rvtests
Rare variant test software for next generation sequencing data
gaofeids's Repositories
gaofeids/BioTools
Genes variants annotation tools using online services. Also does basic manipulations of HPO.
gaofeids/eKLIPse
a tool for predicting mitochondrial DNA deletions using soft-clipping
gaofeids/gatk
Official code repository for GATK versions 4 and up
gaofeids/learning_vcf_file
Learning the Variant Call Format
gaofeids/LongRead_tutorials
Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
gaofeids/MPhil-Genomic-Medicine
Scripts for MPhil research project (Exploring Cancer Predisposition in the 100,000 Genomes Project dataset)
gaofeids/MToolBox
A bioinformatics pipeline to analyze mtDNA from NGS data
gaofeids/NGS_RNA
gaofeids/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
gaofeids/rvtests
Rare variant test software for next generation sequencing data
gaofeids/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
gaofeids/TRAPD
Burden testing against public controls