gaog94

Current medical student at UT Southwestern; former associate computational biologist at Broad Institute

@broadinstitute; @UTSouthwestern

Pinned Repositories

DEGEF
Differentially Expressed Gene Enrichment Finder
Language:Python00
GDAN_QC_CopyNumber
Perform Copy Number Comparison between TCGA Legacy and Harmonized Data (for Genomic Data Analysis Network aka GDAN)
Language:Python0 2 00
svaba
Structural variation and indel detection by local assembly
Language:C++0 2 00
TitanCNA
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
Language:R0 2 00
tool_gistic2_wgs
Set up GISTIC2 workflow (no marker file required)
Language:Shell11
KIRCLE
Algorithm for KIR allele inference
Language:Python2 2 51
svaba
Structural variation and indel detection by local assembly
Language:C++231 17 13544

gaog94's Repositories

gaog94/tool_gistic2_wgs
Set up GISTIC2 workflow (no marker file required)
Language:Shell11
gaog94/DEGEF
Differentially Expressed Gene Enrichment Finder
Language:Python00
gaog94/GDAN_QC_CopyNumber
Perform Copy Number Comparison between TCGA Legacy and Harmonized Data (for Genomic Data Analysis Network aka GDAN)
Language:Python0 2 00
gaog94/svaba
Structural variation and indel detection by local assembly
Language:C++0 2 00
gaog94/TitanCNA
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
Language:R0 2 00