Pinned Repositories
aux_scripts
Auxiliary scripts
bam2vec
Map the content of a BAM file into a vector space.
bin
Bliss
BLISS
Repo for bliss pipeline
cell2vec
CNV
Pipeline to detect copy number variations
complexity
Profile library complexity
complexity_estimation
Scripts to estimate complexity of a library
Contrastive-Learning-NLP-Papers
Paper List for Contrastive Learning for Natural Language Processing
nucleAI
Morphological heterogeneity analysis of whole slide images.
garner1's Repositories
garner1/BLISS
Repo for bliss pipeline
garner1/nucleAI
Morphological heterogeneity analysis of whole slide images.
garner1/aux_scripts
Auxiliary scripts
garner1/bin
Bliss
garner1/cell2vec
garner1/CNV
Pipeline to detect copy number variations
garner1/complexity
Profile library complexity
garner1/complexity_estimation
Scripts to estimate complexity of a library
garner1/Contrastive-Learning-NLP-Papers
Paper List for Contrastive Learning for Natural Language Processing
garner1/cutseq
Pipeline for restseq
garner1/fastq2cloud
Create a point-cloud representation of a genomic corpus.
garner1/gene2vec
genomic representation
garner1/geneModel
create gene models
garner1/genome_segmentation
Segment the genome using unsupervised entropy-based methods.
garner1/genomicNLP
Genomic Natural Language Processing
garner1/gpseq-hic
Combining gpseq and hic dataset
garner1/graviti
GRAph VIsualization of TIssue sections
garner1/iFISH
TDA for fish data
garner1/ivisith
SSF project
garner1/LungCancerHeterogeneity
garner1/qfilter
Filter fastq reads by the quality of specifies bases
garner1/readcountLP
Read count language processing
garner1/reduced_representation
Study reduced representation of the genome
garner1/refgenomeLP
Covered reference genome language processing
garner1/rest2doc
Given a list of cutsites produces genomic documents starting at each cutsite
garner1/restseq_clustering
Use genome segmentation, word embedding and earth mover distance to cluster data from RESTSEQ genome probing.
garner1/signal2graph
Map a univariate signal to a graph
garner1/telomeres
Count DSB belonging to telomeric regions
garner1/UMI
make consensus reads for data with UMI.
garner1/Made-With-ML