gartician
Computational Biologist at the Oregon Health and Science University studying leukemia and building models with the Nikolova Lab
Oregon Health and Science UniversityPortland, OR
Pinned Repositories
ACNH_tidytuesday
What if animal crossing villager's personalities are affected by their birth month?
AmaranthSeeds
Observations of amaranth seeds.
cutTag-pipeline
Pipeline for Cut&Tag analysis
plate-demux
Demultiplex S3-ATAC-Seq reads in 96-well plates
snakemake-resources
useful online resources and personal tips on snakemake
snakemake-teaching-example
summit
Ultralight and fast implementation of GoPeaks to call peaks in CUT&Tag/CUT&RUN data
synapse-upload
Upload an entire directory to a Synapse project
atac_seq
process and analyze paired-end ATAC-Seq data
cutTag-pipeline
Pipeline for Cut&Tag analysis
gartician's Repositories
gartician/snakemake-resources
useful online resources and personal tips on snakemake
gartician/summit
Ultralight and fast implementation of GoPeaks to call peaks in CUT&Tag/CUT&RUN data
gartician/cutTag-pipeline
Pipeline for Cut&Tag analysis
gartician/plate-demux
Demultiplex S3-ATAC-Seq reads in 96-well plates
gartician/ACNH_tidytuesday
What if animal crossing villager's personalities are affected by their birth month?
gartician/AmaranthSeeds
Observations of amaranth seeds.
gartician/snakemake-teaching-example
gartician/synapse-upload
Upload an entire directory to a Synapse project
gartician/talapas-service-unit-calculator
let UO members calculate the cost of their computational jobs
gartician/ATAC-Seq-Meta-Analysis
Grouped DE analysis with ATAC-Seq data. Outputs HOMER-compatible files and GO results.
gartician/bioconda-recipes
Conda recipes for the bioconda channel.
gartician/cellranger-arc-count-slurm-template-ohsu
OHSU-compatible SLURM template for CellRanger ARC Count to enable multi-cluster processing
gartician/CITEVizWorkshop
Workshop to present CITEViz for BioC 2022
gartician/Deduper
gartician/deepTools-bamCoverage
Tools to process and analyze deep sequencing data.
gartician/demultiplexing-adoe21
demultiplexing-adoe21 created by GitHub Classroom
gartician/demultiplexing-AnaHowellsFerreira
demultiplexing-AnaHowellsFerreira created by GitHub Classroom
gartician/demultiplexing-gartician
demultiplexing-gartician created by GitHub Classroom
gartician/gartician
gartician/gartician.github.io
:art: A ridiculously elegant Jekyll theme.
gartician/gatk-resources
useful online resources and personal tips on GATK
gartician/GO-AUC
Take the area under the curve using GO
gartician/gopeaks
Peak caller for CUT&TAG data
gartician/mergebams
Merge multiple bam files and generate bigwig tracks
gartician/motif-mark
Draws genes and motifs given a FASTA and motifs of interest
gartician/SETBP1-CSF3R
SETBP1-CSF3R over-expression project
gartician/slurm-snakemake-profile
Generic Snakemake profile to set up SLURM integration
gartician/snakemake-scrnaseq
Basic snakemake pipeline to process and analyze single-cell datasets
gartician/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
gartician/stowersHackathon2019
Publication metrics of the SIMR